Pseudomonas frederiksbergensis SI8, JZ00_RS10890
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00004, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTGACGTTGACATTCGGGAAGCGCGCGCGGAAGGTCTTGAGGATCGGCGGCAACAGGTTGCCGGCGAAAGATGGCATCGCGGCCAGCGTCACGCGGCCA CGCTGCAAGGTGAAGCGCTGGCGCATTTCGTCTTCGGCGTTGTCCCAGTCGGCCACCAGCCGACGGGCCAGTGGAAGTAATGATTCGCCTTCGGGCGTCA ACGCCACGTTGCGCGTGTTGCGGCTGAACAGGCGACCACCGAGCCCTTCTTCCAGGGCTTTGATCGTCAAGCTCAGGGCCGACTGGGAGAGATGCAGCCG CTCGCAGGCCACGGCGAAGCTAAGGCTCTGGGCCACGGCCAGGAACGCACGGATTTGCTTGAGGGTCATGGTCGCTGCGCTCCAAGGGCAATTGTTGAGT TTTATCAATCAATCAAATCTAAAAATCAACTTAACAAATATATGACTTGGCGCAACACTGCATTTCATTGCGACCCCATTCAAGAATAAAAGAGGTGTCT
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| DNA Sequence for Gene |
>JZ00_RS10890
ATGGCAGGTTTCGACAAACGCGTGAATTCTTACGAAGAAGCGCTGGACGGCTTGAAGGACGGCATGACCATCATCGCCGGCGGCTTCGGTCTGTGCGGCA TTCCGGAAAACCTGATCGCCGAGATCAAGCGCAAGGGCACCCGTGACCTGACCGTGGTCTCCAACAACTGCGGCGTAGACGGCTTCGGCCTCGGCGTGCT GCTGGTGGACCGCCAGATCCGCAAGGTGGTGGCTTCCTACGTGGGTGAAAACGCCCTCTTCGAACAGCAACTGCTGAGCGGCGAAATCGAAGTCGTGCTC ACGCCCCAAGGCACCCTCGCGGAAAAGATGCGCGCGGGCGGCGCAGGCATCCCGGCCTTTTTCACCGCTACCGGCGTCGGTACCCCCGTGGCCGAAGGCA AGGAGGTGCGCGAATTCCATGGCCGCCAGTACCTGATGGAAGAATCCATTACCGGTGACTTCGCCATCGTCAAAGGCTGGAAAGCCGACCATTTCGGCAA CGTGATCTATCGTCACACCGCCCAGAACTTCAACCCGCTGGCGGCCACCGCGGGCAAGATCACCGTGGTGGAAGTCGAAGAAATCGTCGAACCCGGCGAG CTGGACCCGGCACAGATCCATACCCCCGGCATCTACGTCGACCGGGTCATTTGCGGCACGTTCGAAAAGCGCATCGAACAGCGCACCGTCCGTAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCCTGCCCCCGGCCCGAATGAAGGAATGACACCATGGCACTTTCCCGCGAACAAATGGCTCAGCGCGTCGCCCGCGAAATGCAAGACGGCTACTACGT GAACCTCGGTATCGGCATTCCGACCCTGGTTGCCAACTACATCCCCGAAGGCATGGAAGTCATGCTGCAATCGGAAAACGGCCTGCTCGGCATGGGCGCG TTTCCCACCGAAGCGGAAGTCGACGCCGACATGATCAATGCCGGCAAGCAGACGGTCACCGCGCGCATCGGCGCTTCGATCTTTTCCTCGGCCGAATCCT TCGCCATGATCCGTGGCGGCCATATCGACCTGACGGTGCTCGGCGCGTTCGAAGTGGACGTCGAAGGCAACATCGCCTCGTGGATGATCCCCGGCAAGCT CGTCAAGGGCATGGGCGGCGCGATGGACCTGGTGGCGGGTGCCGAGAACATCATCGTCACCATGACCCATGCGTCCAAGGACGGCGAATCGAAACTGCTG
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| Amino Acid Sequence |
>succinyl-CoA:3-ketoacid-CoA transferase
MAGFDKRVNSYEEALDGLKDGMTIIAGGFGLCGIPENLIAEIKRKGTRDLTVVSNNCGVDGFGLGVLLVDRQIRKVVASYVGENALFEQQLLSGEIEVVL TPQGTLAEKMRAGGAGIPAFFTATGVGTPVAEGKEVREFHGRQYLMEESITGDFAIVKGWKADHFGNVIYRHTAQNFNPLAATAGKITVVEVEEIVEPGE LDPAQIHTPGIYVDRVICGTFEKRIEQRTVRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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