Pseudomonas frederiksbergensis SI8, JZ00_RS10320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00004, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGGGAGGAATTCGCCGTCTTGCTGCCCGACACCAACCTGCACGGCGCCATGGCATTGGCCGAGCAGATCCGCCGCAGCGTCATCGACAAGCATATAACC CACTCGGCTTCGCCCTCCGGCTACCTGACGGTCAGCCTGGGCTGCTATGCCTTCGTGCCCAGCAGCCTGGACAGTACCGAAGTGTTTATCCAGCGCACCG ATGCGGCGCTTTATCAGGCCAAGCACAGCGGTCGCAACTGTGTCGCGGCCTTGTCCCGGGAAGGCGCGTTCGATGCGCTGGAACGTTCCGATCGTTGAGA TCCGTTGGAATCATCGGCGACAGCTGACTGTCCATTGCTCATCATGCAGGCGAGGCGTAGGCCCTTTCGTCAAATTTTGTGGGCCCGTCATTTGGCGCGA CGGTGGCTGCTAAGGTTAGGAAAACGCAACGGTCGAATGCACTCGACGCGGTGATGCTTGCACGACGAAGCCCGCGGGCCGAAAGGATAGGAGCAGGTCA
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| DNA Sequence for Gene |
>JZ00_RS10320
ATGGATACCACTGCCGATACCCCCCCTGATGTCTCCCGTCATACGCCAATCACCCGTCGCCTGGTGGCGGCCCTCGGCGGGCTGTTCGTCCTGGGTGTGC TGGTAGCCGTCGCCGCGCTGTTCAATATTGCGCAAAAGCTGGATGCGCAAGACGTGGACGAGACTCGCTTCTACATCGAGCGTGCCCTCGATAATCGCAT CACCGCCTCGAAAAACTACATCACCAGCTACGCGTTCTGGACCACTGCCTACGAGCACCTCAACGCCGAGGTCAATGTGCAGTGGGCCTATGCCGACCAG AACATGGGCAAGACCCTGTTCACCAATGATGAATACGAGGGTGTGTTTGTCATCGACCGGGAACGCACCAAATATGCCGTCGTGCGGGGGCAGCATGTGC AGGCAGAGGCGGCGGCCTATATGGACGCGCCGCTGAAGAAACTCGTGGACGAGCTCCAGGCGCAACCCGACCTGACGAGGCCGATGATCCGCTACACCTT GTTCGAGGGCTGGCCGGCTGTCGTCACGGCTTCGGTGATCGTGCCCAACGACGAACGTCCCCAGGTCGACGCAGAGGGGACATCGATCCTGCTGTTCGTC GACCAACTGACACCGGTGAAGCTGCGCAAGCTGGGCAAGGGCTACGGCCTGACCGACTTGAACCTCGTGGAAGACGCCACATTGGCGCCCGACCAGCCGG CGGTGCCGCTGGACAATACCGGCTACAGCCTGGTCTCGCGACTGGAGCGGCCGGGCCAGCAACTGCTGTGGTCGCTCGCGCCACCGTTGGGAGGCGCGCT GCTGATCCTGGCGTTGCTCACCGTTTATTTCTTTCGCTATGCCATGCGCACGGCTCGACAGGTGGATGCCAGCTACGACAGCCTGGAAAGGTCGAAACAG GCGCTTGAGGCCAGTGAAGAGCGCTTTCGCGCCGTGGCGGAGGCGGCGTCCGACTGGATATGGGAAATCGACAGCCAGCAACGCATCACCTACCTTTCGG GTCGCTTCAACACCGTTACCGGGTTCTCCGACCAGCAGTGGCTGGGTCAGGAGATCGAACAGTTGCTGTATTGCGATACGTTGCCGATTGCCTCCTGGCT GGGCAACCTGGTCGAAGAACAGAACGCCAGCAACCTGCGTTGCTCTTACCGAGATCATTCCGGGCAATTGCGATTCTGTCGGGTGTCGGCACGGCCGATC CACGACAAGGCGACCGTGACGGGCTATCGTGGCACGGCCAGCGACATCACCGATGAGGTAGCTGCCCACGCTCAGGTCCAGCATTTGTCGCTGCATGATG CGTTGACCGGACTGCCGAATCGCAACAAGTTGGCGCGCCATCTGGACGACGCGTTGATTGCCAAGGAGCATTCCGCGCCATTGGCCCTGCTGATGGTGGA CCTGGACAATTTCAAGCCGATCAACGATTCGCTGGGCCATCCGGCGGGCGATGCGGTGTTGCTGGAAGTGGCCCAGCGCCTGCGCGACAGTACCCGCGAA CAGGACCTGGTGGCGCGCCTGGGAGGGGATGAGTTCGTGGTGGTGCTCAGCGGCGTGGAGCACACCTCGGAAATCGACCGATTCTGTACGCGGCTGATCG ACAGCCTGCAGCAACCGATCCACTACGAGTCTCATTCCTTGCACATTGGCGCGAGCATCGGCATCGCCGTGAGCCGACGCCAAGGCTACCTGCCGGGCGA GTTGATCCGCTGCGCCGACATCGCGCTGTACCAGGCCAAGTCCGAGGGCAAGAAGACCTGGTGCTATTTCGCCTCGCACATGAACGATCAGATCCAGCAT CGTCGCCAGCTGGAAAGCGACCTGCGCCAAGCGGTGAAAAACAACGAATTCATCCTGCATTTCCAGCCACGCTACACCGTCGACGGTCGGGAGATCGTCG CGGTCGAGTCGCTGGTACGCTGGCAACATCCAACCCAGGGACTGTTGGGCCCCGATGCCTTTATCCCGCTGGCCGAGCAAACCGACCTGATCGTCCCGCT CTCGCGCTGGGTGCTGCGCGAGGCATGTGAAACCGCGCTGACCTGGCCGGGAACGCTGATGGTTTCGGTCAATCTGTCACCGGCGCAATTCGAGCGCAGT GATGTCGTCGAGGATGTGCGCCAGGTATTGATCGAAACCCACTTCCCGGCGAGTCGCCTCGAACTGGAGATTACCGAAAACGTCATGCTGAACGACGTCG ATGGCGCACTCCAGGTGATGAATGCGCTAAAGGAGTTGGGGGTGCGCTTGAACATGGACGACTTTGGTACCGGTTACTCGTCCCTCGGTTATCTGCGCAC GTACCCGTTCGATGGCATCAAGATCGACAAGCGCTTCATTGCCTCGATGAGCAACAGCAGTAACGACCGGGCGGTGGTCCAGGCGATCATCAACCTGGGC AAGGCAATGGGCTTGACCGTCACGGCGGAGGGCGTGGAAACCCTGGCGCAGTTGGGTTCACTGGGCACGGATGAGTGCCACGAAGTCCAGGGCTATTTCC TCAGCCGGCCCATCGACAAGCAGGCATTCGCCGACCTGCTCGAAAGCGGCCAGTCATTCTCGCGAACCGGTTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGATGGTTGCAACCCGTGGGGCCTGTCGCCGGTCACAACTAAGTCTTGGCATTCAGGAAATTTTCGCCCATGAAGAACCTGCGGATTGCGACTTTCAAC ATCAACGGCATTCGGGCACGGCTACCTAACCTGCTGGAATGGCTGGAGCGGGAAAAACCCGACATTGCCTGTCTGCAGGAGCTCAAGGCGGCGGACAAGG ATTTCCCGGCCGCGGAGCTGGAGTCGGTGGGATACGGATCGATCTGGCATGGCCAGGCGTCGTGGAACGGTGTGGCGATCCTGGCCCGCGATGCGCAACC TTTGGAGAGCCGACGCGGCCTGCCAGGAGGAGAGGATGACAGTCACAGCCGTTATCTGGAAGCAGCGGTGCATGGCGTCCTGGTGGGCTGCCTCTACCTG CCCAATGGCAATCCCCAGCCAGGTCCGAAGTTCGACTACAAGCTGGCCTGGTTCGAACGCCTGATCGAGTATGCGCAGGCACTCCAGGCGAGCGACCATC
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| Amino Acid Sequence |
>histidine kinase
MDTTADTPPDVSRHTPITRRLVAALGGLFVLGVLVAVAALFNIAQKLDAQDVDETRFYIERALDNRITASKNYITSYAFWTTAYEHLNAEVNVQWAYADQ NMGKTLFTNDEYEGVFVIDRERTKYAVVRGQHVQAEAAAYMDAPLKKLVDELQAQPDLTRPMIRYTLFEGWPAVVTASVIVPNDERPQVDAEGTSILLFV DQLTPVKLRKLGKGYGLTDLNLVEDATLAPDQPAVPLDNTGYSLVSRLERPGQQLLWSLAPPLGGALLILALLTVYFFRYAMRTARQVDASYDSLERSKQ ALEASEERFRAVAEAASDWIWEIDSQQRITYLSGRFNTVTGFSDQQWLGQEIEQLLYCDTLPIASWLGNLVEEQNASNLRCSYRDHSGQLRFCRVSARPI HDKATVTGYRGTASDITDEVAAHAQVQHLSLHDALTGLPNRNKLARHLDDALIAKEHSAPLALLMVDLDNFKPINDSLGHPAGDAVLLEVAQRLRDSTRE QDLVARLGGDEFVVVLSGVEHTSEIDRFCTRLIDSLQQPIHYESHSLHIGASIGIAVSRRQGYLPGELIRCADIALYQAKSEGKKTWCYFASHMNDQIQH RRQLESDLRQAVKNNEFILHFQPRYTVDGREIVAVESLVRWQHPTQGLLGPDAFIPLAEQTDLIVPLSRWVLREACETALTWPGTLMVSVNLSPAQFERS DVVEDVRQVLIETHFPASRLELEITENVMLNDVDGALQVMNALKELGVRLNMDDFGTGYSSLGYLRTYPFDGIKIDKRFIASMSNSSNDRAVVQAIINLG KAMGLTVTAEGVETLAQLGSLGTDECHEVQGYFLSRPIDKQAFADLLESGQSFSRTGS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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