Pseudomonas frederiksbergensis SI8, JZ00_RS09750

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF103647
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.1330.60 - IPR036737 OmpA-like domain superfamily 214 343 4.5E-40
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 268 283 3.8E-16
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 238 333 4.0E-23
SUPERFAMILY SSF103088 OmpA-like IPR036737 OmpA-like domain superfamily 223 338 1.44E-38
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 238 260 3.8E-16
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 283 299 3.8E-16
Pfam PF05736 OprF membrane domain IPR008722 Outer membrane porin F, N-terminal 1 179 4.8E-90
Gene3D G3DSA:2.40.160.20 - - - 16 176 7.9E-42
SUPERFAMILY SSF56925 OMPA-like IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel 41 181 2.88E-15
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 233 339 6.53376E-47
SUPERFAMILY SSF103647 TSP type-3 repeat IPR028974 TSP type-3 repeat 191 225 5.75E-9
PANTHER PTHR30329 STATOR ELEMENT OF FLAGELLAR MOTOR COMPLEX - - 230 342 7.3E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.