Pseudomonas frederiksbergensis SI8, JZ00_RS09020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00004, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCGGTATCACCGGGTGGATTTGCGATGAGCGTCGAGGCACTCACTTGCATCCGTTGGTACGGGAAATTCCCCGTGGTCGACTCATGCTCGAAAGCGAT GCGCCATACCTGCTGCCGCGCACCCTACGCCCCAAACCCAAGAACGGTCGCAACGAGCCGGCGTACCTGACTGAGGTCTTGCGCGAGGTTGCCCTGCATC GGGGCGAAACCCAGGAAGACCTGGCGGCCCACAGCACCGCCTGCGCGCGGGCGTTTTTTGGGTTGCCCGTCATCTCCTGACTGGATGGGCACCTGTGGAG CGAGCCTGCCCGCGAAGGCGCGCTGTCAGTGGACCATGTGCGACAGGTCGACCGCTTTCGCGAGCAGGCTCTCCCACAACAGGCTCTCCCACAAAGGGTT ATCGATATCTGTTGATGCACATCAAAACCCCGCGCCCCTGAATAGCAGCAGAATACTGGCACCTTGCCGAAACTGTTTCCGCTATCAGAGAAGACCTACC
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| DNA Sequence for Gene |
>JZ00_RS09020
ATGGGTGCCTGGCTTAGCAATATCTCGCTGAAGTACAAATTCTGGGCGGTCAACGCGGTCGCCTTTGCCACAACGCTGCTGTTGGTGCTCTATGCCATGC ACCTGGAACAGCAGGTCCGAGGGGTAAGCCTGGGCCAAGTCTTCGCTGACCGCTTCAGTCAATATGCCGTGGCGGTGTTTGTGTTGATGCTGGCGATGCT GGGTGCATCGCAACTGTTGATCCGCTTTCTGCTCAGCCAGCTCAACACCTTGAAAGACGTGATGCTGCATGTGGAAAAAACCGGTGACCTGTCCGCCCGC GTGCCCCTGGCCTGCCGGGACGAGGTGGGCCAGATGGCTGCCGCGTTCAACGCAATGCAAGCCGGTTACCAACGCGTGGTGGATACCGTCGCCAGCACCG CACGACAACTGGACAGCGGCGCCGCTCGCCTCGCGTCGAGCATGAACGAAGTGCGCCACGGCATGCTCGGCCAGCAGAGCGAGACCGATCAGGCCGCCAC GGCGATCAATGAGATGTCCGCCACGGTCTATCACATCGCCCAACATGCCGGTGCCACCCGTGACCTGTCGAAAACCACCGACGCCCTGGCCGGTAACGGC CGCGAGGTGGTCGGCCGCGTCCAGCAATCGATTACCGGGCTGTCCACGGGTGTGCAGCAGACCGCCGAGATGATCCAGCGCCTGGCCGAAGACAGTCAGA AAATCAACGGCGTCGTCAGCGTGATCCACAGCATCGCCGAGCAAACCAATCTGCTGGCCCTGAATGCCGCCATCGAAGCGGCACGCGCCGGTGAAATGGG CCGCGGTTTTGCCGTGGTGGCCGATGAGGTCCGCAACCTCGCCAAACGGGTCCAGACCTCGACGGATGAAATCACCACCATGGTCTCGGCGTTGCAGGCG GGAACCCGCGACGCGGTGGATTTCATGCAGGAAAGTTCGCACAAGGCCGACGACTGCGTGCAGCAGGCGTGCGCGGCCGGCGAAGCATTGGCGCAGATCA CCGAGGCGGTGGCGCAGATGCGCGAAAGCAACACCCAGATCGCCGTCGCGGCCGAGCAGCAAAGCCATGTCGCGGAAGAGATGAACCGGGCGGTGGTGAG TATTCGCGACGTGACCGAAAACACCGTGCGCCAGACCGTGGATTCGGCCACCACGAGTGATGAATTGGCGACGCTGGCGGGTGAGTTGAACAAGGCGATT GGGCAGTTGAAGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCCTGAACAAATGGAAATCGGTAGCGAGGGAGCAAGCTCTCTCGCCACAAAAGCCTTATAGCTATGACCAGCTATCGCCACGATAGCCAACCGCGATT CGCCGCCCTGCCCGTCCCGACCTATCCTTCGGTTATTCGGTTTCAACGAACTCAAGGAATAGCATCATGGGCAAACGTCACCCCAACCTTCCGGCCTGGC AATGGCGCGCCTACCCCGACAATCATCGCCACCCGACCAACCTGGTGCTGCATCTGATCGCGGTGCCGTTGTTCATCGTGGCCTTCCTGCTGATCATCTC CGGCGTGTTCAGCCTGAGCCTGGGCGACGTCGCCATCGGCGTCATCGGCCTGCTCGCCGCACTCGGGCTGCAACGCCATGGCCACAGCCTGGAAGCACAA GCCTCCGAGCCGTTCAGTGATCGCAAGGACGCCATGTCGCGCCTGCTGGTGGAGCAATTCCTGACGTTTCCGCGTTTTTTTCTCAACGGTGGCTGGTGGC
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| Amino Acid Sequence |
>chemotaxis protein
MGAWLSNISLKYKFWAVNAVAFATTLLLVLYAMHLEQQVRGVSLGQVFADRFSQYAVAVFVLMLAMLGASQLLIRFLLSQLNTLKDVMLHVEKTGDLSAR VPLACRDEVGQMAAAFNAMQAGYQRVVDTVASTARQLDSGAARLASSMNEVRHGMLGQQSETDQAATAINEMSATVYHIAQHAGATRDLSKTTDALAGNG REVVGRVQQSITGLSTGVQQTAEMIQRLAEDSQKINGVVSVIHSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQTSTDEITTMVSALQA GTRDAVDFMQESSHKADDCVQQACAAGEALAQITEAVAQMRESNTQIAVAAEQQSHVAEEMNRAVVSIRDVTENTVRQTVDSATTSDELATLAGELNKAI GQLKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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