Pseudomonas frederiksbergensis SI8, JZ00_RS08775
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00004, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCAGACCGTACGGTGAGGCTCCCACTGTTTTGCACAATGCCCGGTAGTCCGCATTTTGGGCCAATGCCTGCAGCGAGCGCTGTCCGGTCTCGTCCTCCA AGTACATGGGGGAACAACGCTTTGGTTTAATCAATGTATCGGCAAGCTTCTCGGGGGGGGCGTTTCGGATCAGCGAGAGCAACGCATCGTAGTCGCCCAG TAACCCGTTATGTTTTTCGGCAGGAGACGGGGCTGGGCTCAGTGATGGAGCCGTGGGCGGGTCGGTGGTGAGTAGTGATGACATATCCAGGATTCTCGGT GGTTAATACGGGCCCCGGCAGGCGCGATAATTCGCACTGTCAGGGGGGAGTATCAAAGCACTCCGAAAACGATCGTCGTGGTACATATGTATATTGCGTC AAATAAACGTACAGCCTCTTGCGGGGAGCTGCTGCGCCTCCTAGTCTTGCAAGGATGATCGGCGTCATTGCTGATCACAGCCACCTGTGCAAGGGACCTC
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| DNA Sequence for Gene |
>JZ00_RS08775
ATGAAGCAAGCGCGGACTCTCGGAACCCCTCGGTTGTTGGGCATCGTCTGGCCTTTTATTGCGGTCGTCCTGTTTCAGGCTCTGTTGGGAGGTGTCAGTC TTTACGTTTTGTCCGCAGTTCGCGGTTACGTGGCAGGGGAAAGTCTTTGGTCCAAGGGCCAGAAAGACGCCATTTATTACCTCAACCTTTATGCCGACAG CCGTGACGAAGCGATTTTTCGCAAATACCAGCAAGCGATCGCCGTGCCCGAAGGTGGCCATGAGCTGCGGGTAGCGCTGGACCGCGAGCCGCCTGATCTC GATGCCGCGCGGGCCGGGATTCTCAAGGGTGGCAACCATCCCGACGACGTAGCCAGCGTCATCTGGCTTTACCTCAATTTTCGCCATTTCAGCTATCTGG AAGAAGCCATCGATCTTTGGACGGTGGGGGACGGCTATCTGACAGAACTGGACAATGTCGCCCGGCAGATGCACGCCAGCATCAGCACTGGCCAGGCATC GGAAACGGATATTCGCGGCTGGAAGGCACAGATCTTCGCCATCAATGATTCCGTTACCCCAGCCGCGAAGGCTTTCAGCGATGCCTTGGGCGAGGGGTCG CGGTTTATCCTGCGCCTGTTGCTCGTGACCAACTTCGCCACCGCCCTGGGGCTGATTGTCCTGGCGCTGTTGCGCACTCATAAGCTGCTGGCCCAGCGAC AGGTCTTCGCCAATGCGCTGCAGTTGGAAAAGGAGCGGGCGCAAATCACCTTGCAATCGATCGGCGACGGCGTGATCACCACGGATGTCGAGGGCGCCAT TGCCTACATGAACCCCGCCGCCGAAGCGATGACGCACTGGAAAGCCGAGCACGCCACGGGGTTGCCCCTGGCGGCGCTATTCAATCTGCTCGATGACAAC GCCCAGACCGAGGGACTGACCTTGATCGAGCACATCCTCAGCGGGCGGCTTGGCGGCGGCAGTGAACATTCCAAGCTGATCCAGAGGCTGGACGGCAGTA CGGTGTCGGTCACGCTGGTCGGCGCACCGATCCGCCACGCGGGCAAGGTCAGCGGTGCCGTGTTGGTATTGCACGACATGACCCAGGAACGCCAATACAT CGCCAACCTTTCCTGGCAGGCCACCCACGATGCCTTGACCGGCCTGGCGAACCGCCGCGAATTCGAATACCGACTCGAACAGGCCCTGCATAACCTGACG CGCCAAGTTGGCCGCCACGCCCTGATGTTTCTTGACCTGGACCAATTCAAGCTGGTCAACGATACCTGTGGCCACGCCGCGGGTGACGAGTTGCTGCGGC ATATTTGCGCGTTGTTGCAATCGGGGCTGCGGGAAAACGACACATTGGCGCGCTTGGGCGGCGATGAGTTTGGCATCTTGCTGGAAAACTGCGCGCCAGA GGCGGCGGAGAAAATTGCCGAAGGTCTGCGCCAGACCGTACAGAACCTGCATTTCGTCTGGAAAGGCCGGCCATTCGTGACCACCGTGAGCATTGGCCTC GTGCACATTGCCCAGAGCCCGACCACGCTGGAGGCATCCCTGCGCGCGGCCGACATGGCGTGCTACATGGCCAAGGAAAAGGGGCGCAACCGGGTCCAGG TCTACCATGCCGACGATTCGGAACTGTCCCTGCGCTTCGGCGAGATGGCCTGGGTCCAGCGCTTGCATATGGCCTTGGAGGAAAACCGCTTCTGTCTCTA CGCCCAGGAAATCGCTGCATTGGGGCCGGGTGACCACGGCGGCGGTCATATTGAGATCCTGTTGCGCCTGCATGACGAGGCGGGTCGGATGATCCTGCCG GACAGTTTCATTCCGGCGGCGGAACGCTATGGCCTGATGACGTCGCTGGACCGTTGGGTGGTGGAGAATGTCTTCAAGATCATTCGCCAATGCTTGAACG AATCAAGACAGGGGCCGCTGGCAATGTGTGCGATTAATCTGTCAGGCACGACTATAGGAGATCAGGCATTCCTGGACTTCCTGCGTAAACAGTTCGCCGC TTACGCCATCCCGCCAGAAATGATTTGTTTTGAAATTACTGAAACCAGCGCGATTTCCAATTTGGGCAGTGCGATCCGCTTTATCAATGAACTCAAAGGC TTGGGTTGTTATTTTTCCCTGGACGACTTTTGTGCCGGAATGTCTTCGTTCGCTTACCTGAAACATTTACCTGTAGACTTCTTGAAGATCGACGGGAGTT TCGTAAAGGATATGCTGGACGACCCGATTAACCGGGCAATGGTCGAAGTGATCAATCATATCGGCCACGTCATGGGTAAGCGCACGATTGCCGAGTTTGT AGAAACGACGCAGATCGAGCAAGCCTTGCTGGAGATTGGCGTGGATTACGCTCAGGGGTATGTTATCGAGCGTCCGCAGATGTTTACTTGTGACACATTG CAATGCAGGCCGGCCAGGCCTCAGCCGCTGTTATTCAAGGCCCCCGGCACGTTCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACTCTTGTTGGTCCGCAGAAAATCACAATCAAAAGGAGCCCGACAGTGATCGAGACATTCAACCGAACAGGCCCGCTCATGGACGCTGACAGCTATCCG AAATGGGCACAACAGCTCATTACCGATTGCAGCGAGAGCAAGCGCCGGGTTGTCGAACACGAACTGTATCAACGCATGCGTGACAACAAGCTCAGCGCCA AGACCATGCGCCACTACCTCATTGGTGGTTGGCCGGTCGTTGAACAGTTCGCTTTATACATGGCACAGAATCTCACCAAGACCCGTTTTGCCCGCCATCC CGGCGAGGACATGGCGCGTCGCTGGTTGATGCGCAACATTCGTGTCGAACTCAATCATGCCGACTACTGGGTGAACTGGAGTGCGGCCCATGGCGTGACA CTCGAAGACCTGCAAGCACAGCAAGTGCCGCCTGAGCTGCATGCCCTGAGCCATTGGTGTTGGCACACCAGCTCGGCGGACTCGCTGATCGTGGCGATCG
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| Amino Acid Sequence |
>membrane protein
MKQARTLGTPRLLGIVWPFIAVVLFQALLGGVSLYVLSAVRGYVAGESLWSKGQKDAIYYLNLYADSRDEAIFRKYQQAIAVPEGGHELRVALDREPPDL DAARAGILKGGNHPDDVASVIWLYLNFRHFSYLEEAIDLWTVGDGYLTELDNVARQMHASISTGQASETDIRGWKAQIFAINDSVTPAAKAFSDALGEGS RFILRLLLVTNFATALGLIVLALLRTHKLLAQRQVFANALQLEKERAQITLQSIGDGVITTDVEGAIAYMNPAAEAMTHWKAEHATGLPLAALFNLLDDN AQTEGLTLIEHILSGRLGGGSEHSKLIQRLDGSTVSVTLVGAPIRHAGKVSGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALHNLT RQVGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLRENDTLARLGGDEFGILLENCAPEAAEKIAEGLRQTVQNLHFVWKGRPFVTTVSIGL VHIAQSPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQEIAALGPGDHGGGHIEILLRLHDEAGRMILP DSFIPAAERYGLMTSLDRWVVENVFKIIRQCLNESRQGPLAMCAINLSGTTIGDQAFLDFLRKQFAAYAIPPEMICFEITETSAISNLGSAIRFINELKG LGCYFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETTQIEQALLEIGVDYAQGYVIERPQMFTCDTL QCRPARPQPLLFKAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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