Pseudomonas frederiksbergensis SI8, JZ00_RS08440

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.300:FF:000010 Chaperone clpB 1, putative - - 181 373 8.5E-83
Gene3D G3DSA:1.10.8.60 - - - 794 891 2.3E-9
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 182 373 7.7E-72
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 575 792 1.1E-66
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 621 787 2.3E-38
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 234 367 4.8E-9
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 733 747 4.5E-30
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 1 161 1.6E-40
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 622 781 3.2E-8
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 515 1.35E-71
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 794 886 1.0E-13
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 375 569 1.1E-50
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 18 868 0.0
Coils Coil Coil - - 443 463 -
CDD cd00009 AAA - - 212 367 4.53344E-15
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 700 718 4.5E-30
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 229 374 3.7E-10
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 12 131 3.73E-18
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 626 644 4.5E-30
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 671 689 4.5E-30
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 794 868 7.9E-14
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 584 792 5.82071E-91
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 575 792 9.5E-79
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 571 866 7.09E-63
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 13 878 0.0
Coils Coil Coil - - 528 548 -
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 373 465 3.0E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.