Pseudomonas frederiksbergensis SI8, JZ00_RS06260

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003896 DNA primase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00766
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006269 DNA replication, synthesis of RNA primer
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00766
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016779 nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10410
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.1360.10 - - - 243 370 2.8E-41
SMART SM00766 dnag_dnab_bind_seq8d IPR013173 DNA primase DnaG, DnaB-binding domain 513 638 5.8E-36
SUPERFAMILY SSF117023 DNA primase DnaG, C-terminal domain - - 513 640 3.4E-34
NCBIfam TIGR01391 JCVI: DNA primase IPR006295 DNA primase, DnaG 5 420 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 433 507 -
CDD cd03364 TOPRIM_DnaG_primases IPR034151 Bacterial DnaG primase, TOPRIM domain 261 342 1.76524E-35
Pfam PF01807 CHC2 zinc finger IPR002694 Zinc finger, CHC2-type 6 100 3.4E-41
Pfam PF08278 DNA primase DnaG DnaB-binding IPR013173 DNA primase DnaG, DnaB-binding domain 517 637 2.0E-27
PIRSF PIRSF002811 DnaG IPR030846 DNA primase DnaG, bacteria 2 646 0.0
Coils Coil Coil - - 607 634 -
PANTHER PTHR30313 DNA PRIMASE - - 1 633 0.0
Pfam PF13662 Toprim domain IPR006171 TOPRIM domain 261 329 1.6E-16
Gene3D G3DSA:3.90.980.10 - IPR037068 DNA primase, catalytic core, N-terminal domain superfamily 113 242 5.8E-49
FunFam G3DSA:3.40.1360.10:FF:000002 DNA primase - - 243 370 3.7E-54
Gene3D G3DSA:1.10.860.10 DNAb Helicase; Chain A IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal 503 645 4.1E-36
Gene3D G3DSA:3.90.580.10 - IPR036977 DNA Primase, CHC2-type zinc finger 2 102 1.3E-36
Pfam PF08275 DNA primase catalytic core, N-terminal domain IPR013264 DNA primase, catalytic core, N-terminal 126 254 8.1E-44
Pfam PF10410 DnaB-helicase binding domain of primase IPR019475 DNA primase, DnaB-helicase binding domain 373 425 1.9E-10
FunFam G3DSA:3.90.580.10:FF:000001 DNA primase - - 1 101 2.2E-42
SUPERFAMILY SSF57783 Zinc beta-ribbon - - 4 101 2.04E-38
SMART SM00400 primzinc3 IPR002694 Zinc finger, CHC2-type 36 90 4.5E-34
Gene3D G3DSA:1.20.50.20 DnaG, RNA polymerase domain, helical bundle - - 371 428 6.7E-21
MobiDBLite mobidb-lite consensus disorder prediction - - 478 504 -
SMART SM00493 toprim5 IPR006171 TOPRIM domain 261 332 1.9E-20
Hamap MF_00974 DNA primase [dnaG]. IPR030846 DNA primase DnaG, bacteria 4 639 30.32357
FunFam G3DSA:3.90.980.10:FF:000001 DNA primase - - 110 242 3.2E-49
SUPERFAMILY SSF56731 DNA primase core - - 116 427 6.28E-110

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.