Pseudomonas frederiksbergensis SI8, JZ00_RS03510

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00711
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00711
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00711
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF103473 MFS general substrate transporter IPR036259 MFS transporter superfamily 5 467 6.54E-70
Pfam PF07690 Major Facilitator Superfamily IPR011701 Major facilitator superfamily 19 413 3.3E-49
NCBIfam TIGR00711 JCVI: DHA2 family efflux MFS transporter permease subunit IPR004638 Drug resistance transporter EmrB-like 15 427 1.4E-73
Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains IPR036259 MFS transporter superfamily 263 474 4.7E-19
PANTHER PTHR42718 MAJOR FACILITATOR SUPERFAMILY MULTIDRUG TRANSPORTER MFSC - - 5 471 9.4E-122
CDD cd17321 MFS_MMR_MDR_like - - 19 464 3.63046E-49
Gene3D G3DSA:1.20.1720.10 Multidrug resistance protein D - - 15 250 6.8E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.