Pseudomonas frederiksbergensis SI8, JZ00_RS01440

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00382	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00004	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	610	749	2.2E-8
Pfam	PF07724	AAA domain (Cdc48 subfamily)	IPR003959	ATPase, AAA-type, core	609	773	2.0E-35
SUPERFAMILY	SSF81923	Double Clp-N motif	IPR036628	Clp, N-terminal domain superfamily	11	131	1.07E-19
Coils	Coil	Coil	-	-	427	447	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	559	836	3.07E-59
CDD	cd19499	RecA-like_ClpB_Hsp104-like	-	-	572	774	9.53088E-70
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	IPR003959	ATPase, AAA-type, core	218	323	1.1E-9
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	659	677	4.7E-31
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	563	776	1.9E-63
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	165	357	2.0E-70
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	614	632	4.7E-31
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	721	735	4.7E-31
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	360	557	1.5E-49
Coils	Coil	Coil	-	-	516	536	-
Pfam	PF17871	AAA lid domain	IPR041546	ClpA/ClpB, AAA lid domain	360	451	1.1E-29
NCBIfam	TIGR03345	JCVI: type VI secretion system ATPase TssH	IPR017729	AAA+ ATPase ClpV1	10	847	0.0
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	174	535	8.28E-74
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	213	358	6.2E-10
Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	IPR004176	Clp, repeat (R) domain	21	72	4.4E-10
CDD	cd00009	AAA	-	-	196	351	1.51461E-14
Gene3D	G3DSA:1.10.1780.10	-	IPR036628	Clp, N-terminal domain superfamily	1	157	6.6E-34
PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	-	-	16	846	0.0
FunFam	G3DSA:3.40.50.300:FF:000010	Chaperone clpB 1, putative	-	-	165	357	9.7E-82
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	688	706	4.7E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.