Pseudomonas frederiksbergensis SI8, JZ00_RS01415
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas frederiksbergensis strain SI8 contig00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAAAGAATTGCCACTGGTCGTCGGCATTCTGGCCGACCTCTCGGGCAAGCCATTGGAGCCGCTGCCCAAGCTCAACGAGCGGCGCTTCACCGAGATCGA TCGGGATAATTTCAACGAGGTGCTCGCCTCCATCTCCCCACGCGCCACGCTGCAGGTGAACAACACCCTCAGCGGCGACGACAGCAAGCTCAACATCGAA CTCAACTTCCGCCACATCGATGATTTCGACCCGGTCAAGGTCGTCGAGCAAGTCACGCCACTGCGCCGCTTGTTCGAAGCGCGCCAACGCCTGCGGGACC TTTTGACCAAACTCGACGGCAACGATGACCTGGACAAGCTGCTGCGTGACGTGATCGCCAACACCGAAGGCCTGCAAGAGATCAAGTCGGCCCGGCCACA GGACGCGACGCCAGAACTGCCGACCGTCGCCGCCAACGATGACCCTGCCCCGGCCGAACCACAGGCCTGATCGCGCGCCTCATTCAAGGGAGATAAAGCC
|
|
| DNA Sequence for Gene |
>JZ00_RS01415
ATGCCTGCTTCATCCAGCGCTCAAACCAGCGAGAGCACGACCCAGACCCTGTCCTTGCTGGACAAGATCATCGCCGAAGGCCGCATGGCCCACGACGACA GCCAGCAAGACTACGCCCGCGACATGCTGGCCGAATTCGCCACGCAGGTCCTCGACGAAGGCATGGCCATCGACAAGGACACCGTGGCGATGATCAACGA CCGCATCAGTCAGATCGACCAGTTGATCAGCGCCCAGCTCAACGAAGTCCTGCACCACCCCGAGCTACAGAAACTCGAGGCCTCCTGGCGCGGCCTGCAC CTGCTGGTGCAGAACACCGAAACCAGCACCCGACTCAAATTACGCCTGCTCAACGTCACCCAGAAAGAACTGCAAAACGACTTGGAAAAAGCCGTCGAAT TCGACCAGAGCGCCTTGTTCAAGAAAATCTACGAGGAGGAGTACGGTACCTTCGGCGGACACCCGTTCAGTCTGCTGGTGGGCGACTACACCTTTGGCCG CCATCCGCAGGACATCGGCCTGCTGGAAAAACTCTCGAACGTCGCCGCCGCCGCACATGCGCCGTTCATTGCCGCCGCCAGCCCGCGGCTGTTCGACATG ACCAGCTTCACCGAACTGGCAATCCCCCGGGACCTGTCGAAAATTTTCGAAAGCCAGGAGCTGATCAAGTGGCGCGCCTTCCGTGAAAGCGAAGATTCGC GTTATGTGTCCCTGGTGCTGCCGCAGTTCCTGCTGCGCCTGCCCTACGGCCCGGACACGCTGCCGGTGGAAGGCATCAACTACGTCGAAGACGTCAACGG CACCGACCACAGCAAATACCTGTGGGGCAACGCCTCCTGGGCACTGTCGCAACGCATCACCGAGGCCTTCGCCAAATACGGCTGGTGCGCGGCGATTCGC GGGGCCGAGGGCGGTGGCGCGGTCGAAGGCCTGCCGGCCCATACCTTCCGCACCAGCTCCGGGGACCTGTCGCTCAAATGCCCGACCGAAGTGGCGATCA CCGACCGTCGCGAGAAAGAACTCAACGACTTGGGCTTCATCGCCCTTTGCCATAAGAAAAACAGCGACGTGGCGGTGTTCTTCGGCGGCCAGACGACCAA CAAGGCCAAGGTCTACAACACCAACGAGGCCAACGCCAACGCGCGAATCTCGGCGATGTTGCCGTATGTGCTCGCGGCCTCGCGTTTCGCCCATTACCTG AAGGTCATCATGCGCGACAAGGTCGGCAGCTTCATGACCCGCGACAACGTGCAGACCTACCTCAACAACTGGATCGCCGACTATGTGCTGATCAACGATA ACGCGCCGCAAGAGATCAAGGCGCAGTACCCGCTACGCGAAGCCCGGGTAGACGTGACTGAGGTGGCTGGCAAGCCTGGCGCCTATAAAGCGACGGTGTT CCTGCGGCCGCACTTCCAACTGGAGGAACTCACGGCCTCGATCCGCCTCGTGGCGACCTTGCCGCCACCGGTAGCTGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCACGGTGTGGCTCTGTGGCTGGAGAGCTTTTTGTGACGCGGGAGCAAGCTCCTTCGCCACAAAAGCTCTCTAGCCATAAAAAGCTTTCTAGCCACAGCA AGCGCCTTGGCCACAGGTTAATTCATCGGTATCGGGCACCGCCCATTTCGTCTTCTTCAGGAGTTCCACACAATGGATGCAATCATTCTCGACCTCGGCG GCGACATCAAGGGCGACAGCCTGCTGGAGGGTTTCACGGACAAGATCGAGGTCATGTCCTACAGCCACAACGTGGCCATGCAGGTCACCAACGACGTCAG CAACTCGGAGCGCACCTCCGGCCGCCCGCATATCGGCGAATTCACCCTGACCAAATTCATCGACAGCTCCACCCCGTCGCTCAATGAGTATTGCTGCGCC GGCAAGCCGATCCCGCAAGCCGTCATCACCGTCGGCCGCAACGCCGCCGAAGGCAGCGGCCAAATCATGCCGTTCATTGTCTACACGCTGACCAACGTCG
|
|
| Amino Acid Sequence |
>type VI secretion protein EvpB
MPASSSAQTSESTTQTLSLLDKIIAEGRMAHDDSQQDYARDMLAEFATQVLDEGMAIDKDTVAMINDRISQIDQLISAQLNEVLHHPELQKLEASWRGLH LLVQNTETSTRLKLRLLNVTQKELQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLVGDYTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRLFDM TSFTELAIPRDLSKIFESQELIKWRAFRESEDSRYVSLVLPQFLLRLPYGPDTLPVEGINYVEDVNGTDHSKYLWGNASWALSQRITEAFAKYGWCAAIR GAEGGGAVEGLPAHTFRTSSGDLSLKCPTEVAITDRREKELNDLGFIALCHKKNSDVAVFFGGQTTNKAKVYNTNEANANARISAMLPYVLAASRFAHYL KVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVAGKPGAYKATVFLRPHFQLEELTASIRLVATLPPPVAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|