Strain | Pseudomonas fluorescens strain AU20219 Contig_88, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCTGCCGGCGGTGCGCAGAGTGCGGTTCATTAGGTGTCCTGATGATCCTTGAGTACCTGGCCGCTCACCGCGTCCAGTTCCAGATCCCATTCCAGCCCCT GCGGGTCGCGCAGTTCAACCTGGTAGATGTACTTGCCGTACTCTTCTTCCAGCTCGGTTTCACTGATGCTCGCCCCAGGATGCCGGGACAGGGCCGTGGC ATTGAGTTTTTCAAAGGACACAATGGTACCAGCGTCGCGCAGTCTGAGGGCTTCGTCCGGCCCCAGGTCGCGAGCGTGGGCCAGGCTGGCGGTCAGGGCG ACAAGGCTGGCGCCGAACAGCGCGGCAAGGGTCTTCATGGCAGTTCTCCAAAGTCGATGGCCAAAGGCCGATGCCGCAGACCATACCCAAGGCAACTTAA TTGAAACTGAATCGCCATCATGGCCCCCGACATAAGTTTCACTCGGCCCCCGGCTCCTGGGTTCTCTATACTCGGCGGCTGATTCAAGAGTGAGCCCGGT
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DNA Sequence for Gene |
>AA067_RS19835
ATGACTGCCATCCATATCAAGTTTCCCGCCCTGACCCTCAAGGCCGGCCCCCGCGCCCTGGCCCGCATCCGCCAGCAAGGCCTGCACCCCCGTGAAGTCG GTACCTTGCCCGGCGCCGCCGGCGGCCCCAAGGCCCTGGGCATCCAGGGCCTGGACCTGGCGCTGTTCGGTGAATGGCTGCCATCGGCGCCCCGGGAACG CTCGCTGATCGGCGCCTCGGTGGGTTCCTGGCGTTTCGCCAGCGCCTGCCTGCCGGACGCCGCCGAAGGCATCCGCCGCCTCGGCCAGTTGTACAACGCC CAGAGCTTTGCCAAGGGCGTGACCATGGCGCAGATCAGCCAGAGCTCCCGGCGCATGCTCGAGGAGCTGCTGGAGGGCCGCGACGCCTCGATCCTCGACA ACCCTCACTACCGGCTGAACATCATGGTGGTCAAAAGCCACGGCCTGCTCGCCGACGACCATCGCGGGCGCCTAGGCCTGGGGCTGTCCTCGGTGATCGC CGACAATCTGCGGGGCCGCGCGCGCCTGGCCCGGCACTTCGAGCGCCTGGTGCTGCACGACCCGCGCCTGGCCCCGCCTTTGCACGCTCTGGAAGACTTC CCCTCGCGCTTCGTACCCCTGGACCGCGGCAACCTGCGCCAGGCGCTGCTGGCCTCGGGCTCGATCCCCATGGTCATGCAGGGCGTGCGCGAACTGCCCG GCGCCGGGGCCGGCACCTTCCGCGACGGCGGCCTGCTGGACTACCACCTGGACCTGCCCTACAGCGGCAGCGACATCGTGCTCTACCCGCACTTCACCGA CCGGGTGATCCCCGGCTGGTTCGACAAGACCCTGCCCTGGCGCCGGGCCAGCCCCGAACGCCTGCGCGACGTACTGCTGCTGGCGCCGTCGAAGGAATAC CTGGCGCGCCTGCCCTACGGCAAGTTGCCGGACCGCAACGACTTCAAGCGCTTCATGGGCGACGATGCCAGCCGGCAGAAATACTGGCGCAGCGCCATGG ACGAAAGCCGGCGCCTGGGGGACGAGTTCCTCGAACTGGCCGCGCAGAACCGCATCGGCGAGCGCCTGCAGAGCCTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AGAAGGCCCGCCGCTGCGCACTGACCCTTTAGTCAGGGTTTTTCCGCAAGCGCCGGGGCAAGCTGATAAACTCGCCGCCTGCCTCAACTCGCCCCCGGGC GATAGCCATCTGACAGAGCTGACCGACACTGTGGAAATCTTCAAAGAATTTACCTTCGAATCCGCCCACCGCCTGCCTTTCGTGCCCGAGGGCCACAAGT GCGGCCGCCTCCATGGCCACTCGTTCAAGGTGGCGATCCACCTCAGCGGCGAGGTCGACGCACACACCGGCTGGATCCGCGACTTCTCGGAAATCAAGGC GATCTTCAAGCCGCTGTACGAGCGCCTGGACCACAACTACCTGAACGACATTCCCGGCCTGGAAAACCCCACCAGCGAAGTCCTGGCCAAATGGATCTGG AATGAGCTCAAGCCCCTGCTGCCGGAACTCTCGGCGATCCGCATCCACGAAACCTGCACCAGCGGCTGCATCTACCGCGGCGAATAAGCCCGCCGAAAAA
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Amino Acid Sequence |
>hypothetical protein
MTAIHIKFPALTLKAGPRALARIRQQGLHPREVGTLPGAAGGPKALGIQGLDLALFGEWLPSAPRERSLIGASVGSWRFASACLPDAAEGIRRLGQLYNA QSFAKGVTMAQISQSSRRMLEELLEGRDASILDNPHYRLNIMVVKSHGLLADDHRGRLGLGLSSVIADNLRGRARLARHFERLVLHDPRLAPPLHALEDF PSRFVPLDRGNLRQALLASGSIPMVMQGVRELPGAGAGTFRDGGLLDYHLDLPYSGSDIVLYPHFTDRVIPGWFDKTLPWRRASPERLRDVLLLAPSKEY LARLPYGKLPDRNDFKRFMGDDASRQKYWRSAMDESRRLGDEFLELAAQNRIGERLQSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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