Pseudomonas fluorescens AU20219, AA067_RS24370 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU20219 Contig_80, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCTACCGCGAGTTGGCGCGTGGGGTTCATCCAGACCGTTTTGCCGATGCTTCCGAGCGCGAGCAGCGCCTGGCCCTGGAGCAGTCGGCGAGCCTCAA CGAGGCTTACCAGACCCTCAAGAGCCCGCCCAAGCGCGCCCGTTACCTGCTGGCTTTGAATGGCGGCGAGTTGCCGCTGGAAGTCACGGTGCATGATCCG GAGTTTCTTCTGCAGCAGATGCAGTGGCGCGAAGAGCTCGAGGATTTGCAAGACAGCGCCGACCTGGCCGGAGTGGCGGCATTCAAGCGTCGGCTCAAGA CCGCCCAGGATGAACTGAATGAAAGCTTCGCAGCCTGTTGGGATGATGCGGCGCAACGCGAGCAGGCCGAGCGCCTGATGCGGCGCATGCAGTTCCTCGA CAAGCTCACCTACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGCCGCTCCGGTCGCACGCCTGATATACAGATAAGTCCAGATAAGC
|
|
| DNA Sequence for Gene |
>AA067_RS24370
|hscA
ATGGCCCTACTGCAGATCGCCGAACCCGGCCAAAGTCCTCAACCGCACCAGCGTCGCCTGGCTGTGGGGATCGACTTGGGCACTACCAATTCGCTGGTCG CTGCCTTGCGCAGTGGTCTTTCCGAGCCGCTGGCTGATGCGCAGGGACAGGTGATTCTGCCGTCCGCTGTGCGTTATCACGCCGACCGCGTCGAGGTGGG CGAGTCTGCCCGCCTGGCTGCACCTACCGACCCGTTGAACACCGTGCTTTCGGTCAAGCGCCTGATGGGTCGTGGCCTGTCCGACGTCAAGCAGCTGGGT GAGCAACTGCCCTATCGCTTCGTCGAGGGCGAGTCGCACATGCCGTTCATCGAGACTATCCAGGGGCCGAAAAGCCCGGTTGAAGTCTCGGCGGAAGTGC TCAAGGTGCTGCGTCAGCGCGCCGAAGCTACCTTGGGCGGGGAGCTGGTGGGTGCGGTCATCACCGTTCCGGCCTACTTCGATGACGCTCAGCGTCAAGC CACCAAGGATGCTGCCAAGCTGGCGGGCCTGAATGTACTGCGCCTGCTCAACGAACCGACTGCGGCAGCGGTGGCTTATGGTCTGGATCAACACGCCGAA GGCGTGGTGGCGATCTATGACTTGGGTGGCGGCACCTTCGATATTTCCATTCTGCGCCTGACCGGCGGCGTCTTCGAAGTCTTGGCTACCGGTGGCGATA CTGCCCTGGGCGGCGATGACTTCGATCACGCCATTGCTGGCTGGATCATCGAGGGCGCGGGCCTGTCCGCCGACCTCGACCCCGGTGCCCAGCGCAGTCT GTTGCAAGCTGCTTGTGCGGCCAAGGAAGCCTTGACCGGCGCCGCGTCCGTGGAGGTGGTGTATGGCGATTGGCGTGCCACCCTGACTCGCGACGCTTTC GACGCCCTGATCGAGCCGATGGTGGCTCGCAGCCTCAAGGCCTGTCGCCGCGCCGTTCGCGACTCCAATGTCGAGCTGGACGAAGTGCAGGCCGTGGTCA TGGTCGGCGGCTCGACCCGTGTGCCGCGTGTGCGTGAGGCGGTGGCTGAAATGTTCGGTCGTCAGCCGTTGACCGAGATCGATCCGGATCAAGTGGTGGC CATTGGGGCTGCGATCCAGGCCGATACCTTGGCTGGCAACAAGCGCGAAGGCGGCGAATTGCTGCTGCTGGACGTGATTCCGCTGTCCTTGGGGTTGGAA ACCATGGGTGGGCTGATGGAGAAGGTGATTCCGCGCAACACCACCATTCCGGTTGCCCGTGCCCAGGACTTCACCACCTACAAGGATGGCCAGACGGCCA TGATGGTTCATGTGCTGCAGGGCGAGCGCGAGCTGATCAGCGACTGCCGCTCCCTGGCGCGTTTCGAATTGCGCGGCATCCCGCCGATGGTGGCTGGCGC GGCGAAGATCCGCGTGACCTTCCAGGTCGACGCCGATGGCCTGCTCAGCGTGTCCGCGCGCGAGCTGGGTTCGGGCGTCGAAGCCAGCATCCAGGTCAAG CCATCCTACGGTCTGACCGACGGCGAGATCGCCAAGATGCTCAAGGATTCCTTCCAGTACGCCGGCGACGACAAGGTGGCCCGTGTACTGCGCGAGCAGC AGGTTGATGCTCAGCGCCTCATCGAGGCGGTGCAGGGCGCCCTGGACGCCGATGGCGAGCGTCTGCTGGACGCCGAAGAGCGCATGGTCATCGAGCTGCA GATGCAGGAACTGAGTGAATTGATGCGTGGCACCGATGGTTATGCCATCGAGCAGCAGACCAAGCGTCTGTCGCAAGTGACCGATGCCTTTGCTGCCCGA CGCCTGGATTCGACGGTGAAAGCCGCGCTGGCGGGGCGCAACCTGAATGAAATCGAGGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTGATGCCGCAGATCATTTTTCTGCCACACGCCGTGTTCTGTCCGGACGGCCTGGTTGTAGAGGTCGAGCCTGGCGTCTCGGTGCTCGAGGTGGCCCACG ACAACCACATCGAGATCGAAAGTGCCTGTGGCGGCGTCTGTGCCTGCACCACTTGCCATTGCATCATTCGTGAGGGCTTCGACTCGCTGAACGAGGCTGA CGAACTGGAAGAAGACCTGCTGGACAAGGCCTGGGGCCTGGAAGCGCAGTCGCGCCTGTCCTGCCAGGCCATCGTCGGCGATGAAGACCTGACCGTCGAA ATTCCAAAATACTCGCTCAACCATGCAGCCGAAGCGCCGCACTGATTTCAAGGAACTGGCATGAGCCTCAAGTGGGTTGATGTACTGGAAATCGCGATCC AACTGGCTGAGTCCAAGCCGGATGTGGATCCGCGTTATGTGAACTTTGTCGATCTGCACCAATGGGTTCTGGCACTGCCGGAGTTCAGTGACGATCCGGC
|
|
| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLADAQGQVILPSAVRYHADRVEVGESARLAAPTDPLNTVLSVKRLMGRGLSDVKQLG EQLPYRFVEGESHMPFIETIQGPKSPVEVSAEVLKVLRQRAEATLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQHAE GVVAIYDLGGGTFDISILRLTGGVFEVLATGGDTALGGDDFDHAIAGWIIEGAGLSADLDPGAQRSLLQAACAAKEALTGAASVEVVYGDWRATLTRDAF DALIEPMVARSLKACRRAVRDSNVELDEVQAVVMVGGSTRVPRVREAVAEMFGRQPLTEIDPDQVVAIGAAIQADTLAGNKREGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQTAMMVHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLSVSARELGSGVEASIQVK PSYGLTDGEIAKMLKDSFQYAGDDKVARVLREQQVDAQRLIEAVQGALDADGERLLDAEERMVIELQMQELSELMRGTDGYAIEQQTKRLSQVTDAFAAR RLDSTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|