Pseudomonas fluorescens AU20219, AA067_RS23700
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU20219 Contig_80, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCCTGGCCAGCACCATCGGCGCCGGCAACCCGCTGACCAGCGGCGACACCCCGCTGCTGACCTGCGACGTCTGGGAACACGCCTACTACATCGACT ACCGCAACGTTCGTCCAAAATACGTCGAAGCGTTCTGGAACCTGGTCAACTGGAAATTCGTGGCTGAGCAGTTCGAAGGCAAGAACTTCGTCGCTTAAGT CCGTTTGCAGTGTAAAAAACCCGGCATGGCCGGGTTTTTTTTGCCTCTGGCAAAGCCGGGATCTTGTCCCGCCCACCTGAAGCGCTAAGATTCATGGCAG GTAAAAATAACGCCGCCCCTCAAGTTGCAAGGCGTCGCTACCGACACACTATCCACAGCACGAGCAATCCTGATTCTGATCACCCGGGCCTGGCCCGCAG ACGTCCTGTTCTCGGCACTCATGTCACTTTGACGGCCATCACGGGATTGCCAATACTCATGGCAACTTGACGCTACACGCACGGAACAAGGAATAGCCCT
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| DNA Sequence for Gene |
>AA067_RS23700
TTGAAGCTGGAACTCAAAAACAGCTTGTCGGTGAAGTTGCTCCGGGTTGTGCTGCTGTCGGCACTCATAGTGGGCGTGGTCCTGAGCTGCGCCCAGATCG TCTTCGATGCCTACAAGACTCGGCAGGCGGTAGCTAGCGATGCCCAGCGCATTCTCGACATGTTTCGCGACCCATCGACACAGGCGGTCTACAGCCTGGA CCGGGAAATGGGCATGCAAGTCATCGAAGGCCTGTTCCAGGATGACGCTGTGCGCATGGCCTCCATTGGCCACCCGAACGAGACCATGCTCGCGGAGAAG TCCCGCGACCTGCAGAAATCCTCCAGCCGCTGGCTGACCGACCTGATCCTCGGTCAGGAACGCACCTTTACTACGCAATTGGTGGGCCGAGGCCCATACA GCGAGTATTACGGCGACCTGAGCATCACCCTCGACACCGCCACTTATGGCCAGGGTTTCATCGTCAGTTCGGTGATCATCTTCATTTCCGGAGTCCTGCG GGCACTGGCCATGGGCCTGGTGCTGTACCTGGTCTATCACTGGCTGCTGACCAAGCCGCTGTCGCGGATCATCGAGCACCTGACCACCATCAACCCCGAC CGCCCCAGCGAACACCAGTTGCCCCTGCTCAAGGGCCACGAGAAGAACGAGCTGGGGATCTGGATCAATACCGCCAACCAGTTGCTGGCCTCCATCGAGC GCAATACCCACTTGCGTCACGAGGCGGAAAACAGCCTGTTGCGCATGGCCCAGTACGACTTCCTCACCGGCTTGCCAAACCGCCAACAGCTGCAACAACA GCTGGACAAGATCCTGGTGGACGCCGGGCGCCTGCAACGCCGGGTAGCGGTGCTCTGTGTCGGCCTGGATGATTTCAAGGGCATCAACGAACAGTTCAGC TACCAGACCGGCGACCAGCTGTTGCTGGCCCTGGCCGACCGCCTGCGCGGCCACAGCGGCCGGCTTGGCGCCCTGGCACGCCTGGGGGGCGATCAGTTCG CCCTGGTCCAGGCCGATATCGAACAGCCTTATGAAGCTGCGGAACTGGCCCAGAGCATCCTCGATGACCTGGAGGCCACCTTCGCCCTGGATCACCAGGA AATCCGCCTGCGTGCCACCATCGGCATCACCCTGTTCCCGGAAGACGGCGACAGCACGGAAAAGCTCCTGCAAAAAGCCGAACAGACCATGACCCTGGCC AAGACCCGGTCGCGCAATCGGTATCAGTTCTATATCGCCAGCGTCGACAGCGAGATGCGTCGCCGCCGCGAGCTGGAAAAAGACCTGCGCGAGGCCTTGG CCCGGGATCAGTTCTTCCTCGTCTACCAACCGCAGATCAGCTATCGCGACCACCGTGTGGTGGGCGTCGAAGCGCTGATCCGCTGGCAGCACCCCGAGCA TGGCCTGGTGCCGCCAGACCTGTTCATTCCCCTGGCGGAACAGAACGGGACCATCATCGCCATCGGCGAATGGGTGCTGGACCAGGCCTGCCGCCAGCTG CGGGAATGGCACGACATGGGCTTCAGCGACCTGCGCATGGCGGTCAACCTGTCCACCGTGCAACTGCACCACGCCGAATTGCCACGGGTGGTCAACAATC TGTTGCAGATCTACCGCCTGCCGCCCCGCAGCCTGGAGCTGGAAGTCACCGAAACCGGCCTGATGGAAGACATCAGCACCGCCGCCCAGCACCTGCTGAG CCTGCGCCGCTCCGGCGCCCTGATTGCCATCGACGACTTCGGCACTGGCTACTCGTCTTTGAGCTACCTCAAGAGCCTGCCCCTGGACAAGATCAAGATC GACAAGAGCTTCGTCCAGGACCTGCTGGATGACGACGACGATGCCACCATCGTGCGCGCGATCATCCAGTTGGGTAAGAGCCTGGGCATGCAGGTGATCG CCGAGGGCGTGGAAACTGCCGAGCAGGAGGCCTACATCATCTCCGAAGGCTGCCACGAAGGTCAGGGCTACCACTACAGCAAACCCCTGCCCGCCCGGGA GCTGGGGGCCTACCTGAAACAGGCCCAGCGCAGCAATGCGGCAATCCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCAGGCACGGCGCTGGCGAACCTGACCCAGCGCAATCCCCTGTTGAATAAGAAATATTTCCAGGCACAACCCTTTACACATAATGCAAATCTTTCGCAT TATGTCGCAGCTTTTGCGCGCCCCCGCGCCGTCCACTCCCCTCTCGAAGCAGGATGTTCGCCATGATTCGTATGCCTCTGGCTACCGCCAGTCTGTTGGC CATCGCCATTTCCCTCGCCGGCTGCGGCGAAGGCAAAGACGACAAGGCTGCCGCCCAAGCGCCGACCCCGGCCACCAGCACTGCCACCCCAGCGGCCGAT GCGGCCGGCAAGGTCGACGAAGCGGCTGCCAAGGCCGTGGTCGCGCATTACGCCGACATGGTCTTCGCCGTATACAGCGACTCCGAATCCACCGCGAAAA CCCTGCAAACCGCCATCGATGCCTTCCTCGCCAAGCCCAACGAGGACACCCTGAAAGCCGCCAAGGCTGCCTGGGTCGCCGCTCGCGTGCCTTACCTGCA
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVASDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDDAVRMASIGHPNETMLAEK SRDLQKSSSRWLTDLILGQERTFTTQLVGRGPYSEYYGDLSITLDTATYGQGFIVSSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTTINPD RPSEHQLPLLKGHEKNELGIWINTANQLLASIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGRLQRRVAVLCVGLDDFKGINEQFS YQTGDQLLLALADRLRGHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEATFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KTRSRNRYQFYIASVDSEMRRRRELEKDLREALARDQFFLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACRQL REWHDMGFSDLRMAVNLSTVQLHHAELPRVVNNLLQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIISEGCHEGQGYHYSKPLPARELGAYLKQAQRSNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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