Strain | Pseudomonas fluorescens strain AU20219 Contig_77, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCCTGTTCGACTCTTTTTCCAGCAGCCACGTGGTTATATTTTTGTCGCACCGAATTGAACTTGCTCTGCAAGAAGGTCTTCAGAAATGTCCAACAGTATG GGTATCGCCAGCGCGTTTGTTTTGTCTTCCCTGTTCGTGGCCCCGATGGCCATGGCCGAAGAATCCCAGGGATTCGTGGCAAGAAATGCCGCACGCGCCG CCGCTTTCGAACAAGCCCAGATCGCCCAGGCAGCCCAGCAGCAAAACACTCAGCAAGCCCAGAAGATCACTGCCGAACAGAGCAAGAGCGACACGCAGAA AGACAGTTGATCCTAGCTTTCGACTTGTTTCCCTCGACAACTTCTCTGCTTTCAACCCGGGAGTAAGTTGTCTTAAAGCCGCTGAGTTCAGCGGCTTTTT TTTGCCGTATGGAAACCCTCGGCACACTCGTCATACCCAGAACAAGAAACACCCGAATTCACAATAAGAAGCCATTGTCGTTCACCAAAGGAGCTAAACG
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DNA Sequence for Gene |
>AA067_RS24825
TTGTTCAAGACCTCACTGAAGATCAGCCCCCTGTTCATTGCAATCGCCGCAACGATCCCAACACTCGGGCAAGCCGCCGAAGACCCCAGGGCCGAGGGTT TTGTCGAGGGTTCGAGCCTCAAGCTCAACGCCCGCAACTACTACATGAACCGCAACCGCCTGCAGCAGAACAACGACAACATCGAATGGGGCCAGGGTTT GCTCGGCGTCTTCGAGTCGGGTTACACCCAGGGCACCGTGGGTTTCGGCCTTGATGCCAACGCCATGCTCGGCCTCAAGCTGGACGGCGGTGGCGGCACC ACCAATTCGAGCATCCTGCCTATCAGCGACGATGGCCGGCACAAGGCACCCGGCTCGTTCTCCACCGCCGGCGCCACCTTGAAAATGCGTGCCTTCGATA CCGAGCTCAAGGCAGGCGACCTGTTCCTCAACAACCCGGTGATCGCCGGCGGCATGAGCCGCATGCTGCCCCAGACCTTCCGCGGCGTGAGCCTGACCAA CCACAGCTTCGACGGCTGGTTGATCGAGGGCGGCCAGGCCAGCTTCACCAAGCCGTACAACCAGAGCGGACACAAGCGCATCGGTACTTCCTACGGCAGC CTGCGCGAGGGCGACGAGAGCCTGCACCTGAACTGGGCCGGCGTGGCCTGGAGCGGCGTTCCAGGACTGACCAGCAGCCTCTATGCGTCCGAACTCAAGG ACATCTGGAATCAGTACTACTACGACCTGGACTACACCTACGCGGTCAACGAACTGGTCAGCCTCAACCCGGGCCTGCACTTCTATCACACCCAGGACAC CGGCCAGGCGCTGCTGGGCAACATCGACAACAACACCTACAGCCTGCACTTCACCGTCGGCGTGGGGAACCACAGCGTCACCGCGGCCTACCAGCGGGTC AATGGCAACACGCCATTCGACTACATCGCCCAGGGCGACAGCATCTACCTGGACAACTCCCAGCAGTATTCGGACTTCAACGGGCCCAACGAGCGTTCGT GGAAGCTCAAGTACGCCTATGACTTTGCCGGCCTCGGCCTGCCGGGCCTGACTTCGGCGCTGTCCTACTCGCGTGGCGAGCTGGACCTGACCAAGGTCGA TCCCGCCAGCCGCGGCTATGCCAGCTGGTACAGCGCCGACGGCAAGAACGCCAAGCACTGGGAGCGCGACCTGGACCTCAAGTACGTGGTGCAGGGCGGC AGCGCCAAGGACCTCGCCGTACGCCTGCAGTGGGCCACCAACCGTGGCGGCAACGGCTACGGCGCGCTGGACAACGACACCGACGAATACCGGGTGATCG TCGACTACCCGATCAACGTCTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCCACTCAAACAAAAAGACCAGCATGTTTTGCTGGTCTTTTTTTTATCGGAGATTTATACAGGCGCGCAGGCGTGACCGATTTCTGTAGCCCACGTCCAC ACTAGACTCAAAACTGTCGACGCAGCAGAAATCAAAATCATGAACGTGAGTAGTGCGACACCCCGCACAGGGAAAATCGCGTCAAATACCGAGCGCCTGC TGATCCTCTCCAGCTCGCTGATCGTTGTAGCCATTCTCGGCATCGTCACCTACCTGTTGATCCGCGAGCACGCCGCTGCCGAACAGGCTGCCACACGTGC CGCCAACAACATCGTGCAATTGATCGACGCCGATGTATTGCGCAACGTCGAGCTCTACGACCTGTCTCTCAAGGGACTGATCAGTGCCGCGCAACGTGAC GATCTGAAGGATGCCTCGGCGTCCATACGTCACCTGGCGCTGTTCGACCGGGCCACCGCAGCGCCCTACAAGGGCGACATCCTCCTGCTGGACAGGCACG
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Amino Acid Sequence |
>porin
MFKTSLKISPLFIAIAATIPTLGQAAEDPRAEGFVEGSSLKLNARNYYMNRNRLQQNNDNIEWGQGLLGVFESGYTQGTVGFGLDANAMLGLKLDGGGGT TNSSILPISDDGRHKAPGSFSTAGATLKMRAFDTELKAGDLFLNNPVIAGGMSRMLPQTFRGVSLTNHSFDGWLIEGGQASFTKPYNQSGHKRIGTSYGS LREGDESLHLNWAGVAWSGVPGLTSSLYASELKDIWNQYYYDLDYTYAVNELVSLNPGLHFYHTQDTGQALLGNIDNNTYSLHFTVGVGNHSVTAAYQRV NGNTPFDYIAQGDSIYLDNSQQYSDFNGPNERSWKLKYAYDFAGLGLPGLTSALSYSRGELDLTKVDPASRGYASWYSADGKNAKHWERDLDLKYVVQGG SAKDLAVRLQWATNRGGNGYGALDNDTDEYRVIVDYPINVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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