Pseudomonas fluorescens AU20219, AA067_RS24825

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU20219 Contig_77, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCCTGTTCGACTCTTTTTCCAGCAGCCACGTGGTTATATTTTTGTCGCACCGAATTGAACTTGCTCTGCAAGAAGGTCTTCAGAAATGTCCAACAGTATG GGTATCGCCAGCGCGTTTGTTTTGTCTTCCCTGTTCGTGGCCCCGATGGCCATGGCCGAAGAATCCCAGGGATTCGTGGCAAGAAATGCCGCACGCGCCG CCGCTTTCGAACAAGCCCAGATCGCCCAGGCAGCCCAGCAGCAAAACACTCAGCAAGCCCAGAAGATCACTGCCGAACAGAGCAAGAGCGACACGCAGAA AGACAGTTGATCCTAGCTTTCGACTTGTTTCCCTCGACAACTTCTCTGCTTTCAACCCGGGAGTAAGTTGTCTTAAAGCCGCTGAGTTCAGCGGCTTTTT TTTGCCGTATGGAAACCCTCGGCACACTCGTCATACCCAGAACAAGAAACACCCGAATTCACAATAAGAAGCCATTGTCGTTCACCAAAGGAGCTAAACG
DNA Sequence for Gene
>AA067_RS24825
TTGTTCAAGACCTCACTGAAGATCAGCCCCCTGTTCATTGCAATCGCCGCAACGATCCCAACACTCGGGCAAGCCGCCGAAGACCCCAGGGCCGAGGGTT TTGTCGAGGGTTCGAGCCTCAAGCTCAACGCCCGCAACTACTACATGAACCGCAACCGCCTGCAGCAGAACAACGACAACATCGAATGGGGCCAGGGTTT GCTCGGCGTCTTCGAGTCGGGTTACACCCAGGGCACCGTGGGTTTCGGCCTTGATGCCAACGCCATGCTCGGCCTCAAGCTGGACGGCGGTGGCGGCACC ACCAATTCGAGCATCCTGCCTATCAGCGACGATGGCCGGCACAAGGCACCCGGCTCGTTCTCCACCGCCGGCGCCACCTTGAAAATGCGTGCCTTCGATA CCGAGCTCAAGGCAGGCGACCTGTTCCTCAACAACCCGGTGATCGCCGGCGGCATGAGCCGCATGCTGCCCCAGACCTTCCGCGGCGTGAGCCTGACCAA CCACAGCTTCGACGGCTGGTTGATCGAGGGCGGCCAGGCCAGCTTCACCAAGCCGTACAACCAGAGCGGACACAAGCGCATCGGTACTTCCTACGGCAGC CTGCGCGAGGGCGACGAGAGCCTGCACCTGAACTGGGCCGGCGTGGCCTGGAGCGGCGTTCCAGGACTGACCAGCAGCCTCTATGCGTCCGAACTCAAGG ACATCTGGAATCAGTACTACTACGACCTGGACTACACCTACGCGGTCAACGAACTGGTCAGCCTCAACCCGGGCCTGCACTTCTATCACACCCAGGACAC CGGCCAGGCGCTGCTGGGCAACATCGACAACAACACCTACAGCCTGCACTTCACCGTCGGCGTGGGGAACCACAGCGTCACCGCGGCCTACCAGCGGGTC AATGGCAACACGCCATTCGACTACATCGCCCAGGGCGACAGCATCTACCTGGACAACTCCCAGCAGTATTCGGACTTCAACGGGCCCAACGAGCGTTCGT GGAAGCTCAAGTACGCCTATGACTTTGCCGGCCTCGGCCTGCCGGGCCTGACTTCGGCGCTGTCCTACTCGCGTGGCGAGCTGGACCTGACCAAGGTCGA TCCCGCCAGCCGCGGCTATGCCAGCTGGTACAGCGCCGACGGCAAGAACGCCAAGCACTGGGAGCGCGACCTGGACCTCAAGTACGTGGTGCAGGGCGGC AGCGCCAAGGACCTCGCCGTACGCCTGCAGTGGGCCACCAACCGTGGCGGCAACGGCTACGGCGCGCTGGACAACGACACCGACGAATACCGGGTGATCG TCGACTACCCGATCAACGTCTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCACTCAAACAAAAAGACCAGCATGTTTTGCTGGTCTTTTTTTTATCGGAGATTTATACAGGCGCGCAGGCGTGACCGATTTCTGTAGCCCACGTCCAC ACTAGACTCAAAACTGTCGACGCAGCAGAAATCAAAATCATGAACGTGAGTAGTGCGACACCCCGCACAGGGAAAATCGCGTCAAATACCGAGCGCCTGC TGATCCTCTCCAGCTCGCTGATCGTTGTAGCCATTCTCGGCATCGTCACCTACCTGTTGATCCGCGAGCACGCCGCTGCCGAACAGGCTGCCACACGTGC CGCCAACAACATCGTGCAATTGATCGACGCCGATGTATTGCGCAACGTCGAGCTCTACGACCTGTCTCTCAAGGGACTGATCAGTGCCGCGCAACGTGAC GATCTGAAGGATGCCTCGGCGTCCATACGTCACCTGGCGCTGTTCGACCGGGCCACCGCAGCGCCCTACAAGGGCGACATCCTCCTGCTGGACAGGCACG
Amino Acid Sequence
>porin
MFKTSLKISPLFIAIAATIPTLGQAAEDPRAEGFVEGSSLKLNARNYYMNRNRLQQNNDNIEWGQGLLGVFESGYTQGTVGFGLDANAMLGLKLDGGGGT TNSSILPISDDGRHKAPGSFSTAGATLKMRAFDTELKAGDLFLNNPVIAGGMSRMLPQTFRGVSLTNHSFDGWLIEGGQASFTKPYNQSGHKRIGTSYGS LREGDESLHLNWAGVAWSGVPGLTSSLYASELKDIWNQYYYDLDYTYAVNELVSLNPGLHFYHTQDTGQALLGNIDNNTYSLHFTVGVGNHSVTAAYQRV NGNTPFDYIAQGDSIYLDNSQQYSDFNGPNERSWKLKYAYDFAGLGLPGLTSALSYSRGELDLTKVDPASRGYASWYSADGKNAKHWERDLDLKYVVQGG SAKDLAVRLQWATNRGGNGYGALDNDTDEYRVIVDYPINVF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site