Pseudomonas fluorescens AU20219, AA067_RS02835
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU20219 Contig_67, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCGGCGATCTGGGCGTTCTGCTGGACCGGGAACAGCGCCGGCTCCTCGCTCCAGTACCAGCCCAGGGCACCGGTGACCAGCAGATACAGGCCCAGCA AGGTGGCCAGGGCACGACTGAACAGCAGGCCACCGAAATAGCTGCGTGTCGCCGACTTGGGTTCGGCAGCACGATCCGGCGCGCTGCCTGCGCGATTCTT CCAATCCAGCATGGCTATGTCCTTTCAATCACTTGAGTTCATCGGTTCGACCACAACCCTACTCCATCGTGCCTTGCCTTGACGGGATAAATCTTCCGGC AAATGCGCGCCGCGCAATGATTGCGAATCAGCTGGCCACTATAAATGAAGCACAGTCCGCAGCCTACGCGACCAGTCGGTCAGGAACTGAATAACGTCGC TTTGCACATTATTGACGTACGACACTCATGGGACACAAAAGTGGTGCTAGCATAGAGCCACCAGTCGATCTCAGCATGCACCCTAACTAGTAGTCAGGAT
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| DNA Sequence for Gene |
>AA067_RS02835
ATGACCGAGCCAGAAGACCCCAGCCGTGAGCGCCTCAAGCACCACTTTGCCCAGCGGGTAATTCATCAGGCACGTCAGATTCTTGAGATATGGCAGCGTC TGCAACGCAGCGAATGGTCGACCACCGACATGTCGGAGCTGTGCGAGGCCAACCTGCGCCTGCTGCGCTTCGCCGAACGTTTCGAACAGCCCGAACACAC CCAACTGGCCCGCAGCATCAGCCAGTCCCTGGAAGCCGTGGACGCCAACCGTGGCCGCCTCAGCAGCAACCTGATCACCGACCTCAACCGCCTGATGCAG CGCCTGTCGCGCACCGGCCTGCGCCACGGCGACCAGTTGGAACAGACCTTCCTGCCGCCCCTGCGCAAACCAATCTATGTGATGTTGCAAGACCACGACC GGGCCGAGCGCCTGGCCAAGCAGTTGGAATTCTTCGGCCTCAGCGCCCAGGCCCTGGACAGCATAGCGGCCTTTCGTTCGTCCATGGTCGAGCGCCTGCC GGCGGCCATTGTCATTGACGTCGACTTTTGCGGCCCCGGCATGGGCCTGACCCTGGCCGCCGAGGCCCAGGTCGGCCTGGAGCAGAAACTCCCGCTGCTG TTCTTCAGCCTGCATGAAACCGATACCCCGACCCGCCTGGCCGCCGTGCGCGCCGGTGGCCAGGAGTTCCTCACCGGCACCCTGGAAGCCTCCAGCCTGT TGGAAAAGATCGAGGTGCTGACCTGCGTCGCCCAGTACGAGCCTTATAAGGTGCTGATCATCGACGACTCCCGGGCCCAGGCGCTGCACACCGAGCGCCT GCTCAACAGTGCCGGGATCGTCACCCGCACCCTGATCGAACCGATCCAGGCCATGGCCGAGCTGGCGGACTTCCAGCCGGACCTGATCATTCTCGACATG TACATGCCGGCCTGCACCGGCACCGAGCTGGCCAAGGTAATCCGCCACAACGACCGCTACGTCAGCGTGCCGATCATCTACCTGTCCGCCGAGGACGACC TGGACAAGCAGCTGGACGCCATGAGCGAAGGCGGCGACGACTTCCTCACCAAGCCGATCAAGCCCCGGCACCTGATCACCACCGTGCGCAACCGCGCGGC CCGGGCGCGCAACCTCAAGGCGCGGATGGTCCGCGACAGCCTCACCGGCCTGTACAACCACACCCATATCCTGCAATTGCTTGAAGACTGCAGCTTCCGC GCCCGTCGCGAGGGCAAGCCGCTGAGTTTCGCCATGCTGGATATCGACCACTTCAAGCGGGTCAACGACAGCCACGGCCACCCCATGGGCGACCGGGTGA TCAAGAGCCTGGCGCTGTTTCTCAAACAGCGTCTGCGCAAGACCGACTTCATTGGCCGCTACGGCGGCGAAGAATTTGCCATTGTCATGCCCGACACCGA CCAGGACGCCGCATGCAAGGTTCTGGACGAAATCCGCCAGCGTTTTGCCGAGATCCACTACCCGGCCCAGCCCCAGGACCTGTGGTGCACCTTCAGCGCC GGGGTGGTGGAGATGCAGGAAGATTCCGACAGCCTGATGATGGCCAGCCAGGCTGATGAAGCCCTGTACCGGGCCAAGCATGGCGGGCGCAACCGGGTCC AGGCCGCGCGATCAAGTCAAAGTGCCATCTTTTCATCCGAATCCACCGATTCGGTCATAACCTTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACAAACGCAATAAATTCAGGCGCTTACCATTTAAGCCGTTGGTAGAGCCCCGATGCGCCTGAAGCTGCTGACCAATCTCAATACCCTGTTGCTCGTTGC CGTTTGCCTCGCCCTGGGGGCGACGCTGTGGTGGTCGCAACGGGCCCTGGAACGCCCCTATCTATTGATGGAGCGTTACCTGGGGCTGTCCCAGCAGTTT CAGAACCAGGTGGCGCGCAACATCGACGACTACCTGGCCAGCGGCGATGCCCTGCGCCTGAGCAGTGCGGCCCAGGCGCTGGAAACCCTGCAAGGCGAGC TGAGTGAACTGCCGCCACCGCTGGCGCAAAGCCTGCGCCCGAGCCTGGCCAGCCTCGATGCCTTCAGCAAGACCGACCTGCTGGCCGCCGGCAAGCTGGC AGGCGATCCCCAGGCCCTGCTGTTGCAGGCCGAACGCGAACTGGGCGCCAACCTGGAGCAGCTCAGCCAGTACGCCAGCGGGGCCAAGAGCGCGGAAGCG
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| Amino Acid Sequence |
>diguanylate cyclase
MTEPEDPSRERLKHHFAQRVIHQARQILEIWQRLQRSEWSTTDMSELCEANLRLLRFAERFEQPEHTQLARSISQSLEAVDANRGRLSSNLITDLNRLMQ RLSRTGLRHGDQLEQTFLPPLRKPIYVMLQDHDRAERLAKQLEFFGLSAQALDSIAAFRSSMVERLPAAIVIDVDFCGPGMGLTLAAEAQVGLEQKLPLL FFSLHETDTPTRLAAVRAGGQEFLTGTLEASSLLEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRTLIEPIQAMAELADFQPDLIILDM YMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNRAARARNLKARMVRDSLTGLYNHTHILQLLEDCSFR ARREGKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPDTDQDAACKVLDEIRQRFAEIHYPAQPQDLWCTFSA GVVEMQEDSDSLMMASQADEALYRAKHGGRNRVQAARSSQSAIFSSESTDSVITL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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