Pseudomonas fluorescens AU20219, AA067_RS26735
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU20219 Contig_59, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCCTGGCCGAAGAGGCGGGCGGCCAGCCGGTGATGCTGGAGGACGCGGTGCGCCAGAGCCTGTTGAGTTATTCCTGGCCGGGTAACGTGCGGCAACTGC GCAACGTGCTGCGCACCCTGGCGGCCTTGTGTGAAAACGGCCGCATTGGCCTGGATGATCTGCCGCCGTTGATCCGCCACAGCCGCCCGGCGCCGCTGGG CGAAGCAATAGCAGAGGTGCCGGAGCGGCCACTGGAGGATGCCGAGCGGGTGGCGTTGCTGGCGGCCCTGGAGCAGCAGCGCTGGCACATGACCCATACC GCCGAGCAGTTGGGCGTGAGCCGCAACACCCTCTATAGAAAGCTGCGCAAGCACGGCATCGCGCGCTAGTCCGAGCTGCCGGCCGCTGCTGGCCCGTCGG GCTTGCGCCGGCGCAGGCCAGCAGCAACCTCCCGGTCAGCTAATGGGTGCGATTTGCAGCCCTCTACGCTAACCTGCGCCGATGTTTTTCGAGGTCGACT
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| DNA Sequence for Gene |
>AA067_RS26735
ATGCACATCCATATTCTCGGTATCTGCGGCACTTTCATGGGGTCGATGGCGGTTCTGGCCAAAGAGCTGGGCCATCACGTCACCGGTTCCGACGCTAACG TGTATCCACCGATGAGCACCCAGTTGCAGGCCCAGGGCATCGAGCTGACCCAGGGCTACGATCCTGCCCAGCTGGACCCGGCGCCGGACCTGGTGGTGAT CGGCAATGCCATGTCCCGCGGCAACCCGGCGGTGGAGTATGTGCTGAACAAGGGCCTGCCCTATGTGTCCGGCCCGCAATGGCTGGCCGACCATGTGCTG CAGGGGCGTTGGGTACTGGCGGTGGCCGGGACCCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTCCTGGAGCATGCGGGCATGAGCCCGGGCT TCCTGATCGGCGGCGTGCCACAGAATTTCGCCGTCTCCGCGCGCTTGGGCGGTACGCCGTTCTTCGTGATCGAGGCTGATGAGTACGACAGCGCCTTCTT CGACAAGCGCTCGAAGTTCGTCCACTACCGCCCACGGACCGCGATCCTCAATAACCTGGAATTCGATCATGCGGACATCTTCCCTGATCTTCCGGCTATC GAGCGGCAGTTCCACCATCTGGTGCGGACCATTCCCAGCGAAGGCCTGGTGATCCATCCCACCACCGAGCCGGCCTTGCAGCGGGTGATCGAGATGGGCT GCTGGACCCCGGTGCAGACCACCGGCGCCGGTGGCCAGTGGCAGGTCAAGTTGCTCAGCGCCGACGGTTCGGCCTTCGAGGTGATGTTCGAAGGCGTGAG CCAGGGCGTGGTGGAGTGGGAGCTGACCGGCCAGCACAACGTCGCCAATGCCCTGGCCACCCTGGCTGCGGCACGCCATGTGGGCGTGGTGCCGTCGATG GGCATTGCCGGCCTGAGCGCGTTCAAGAGCGTGAAGCGGCGCATGGAGAAAGTCGCCGAAGTGCATGGCGTGACCATCTACGACGACTTCGCCCATCACC CGACGGCCATCGCCACTACGCTGGATGGCTTGCGCAAGCGGGTTGGCGATGCCCCGGTGATCGCCATCATCGAGCCGCGCTCCAATTCCATGAAGCTCGG CGCGCACCGCGATGGCCTGCCGGAAAGCGTCAACCAGGCCGATCAGGTGATCTGGTATGCCCCGGCCAACCTGGGCTGGGACCTGGCCGCCACGGCGGCC TTGTGCACGGTGCCGTCGATTGTCAGCGACTCTCTGGAAGGCATCATCGAGCGGGTGAAGAGCCAGGCCAAGCCGGGCACCCAGGTGGTGATCATGAGCA ACGGCGGCTTTGGCGGCCTGCACGGCAAACTGGCCGAGGCGCTGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAATGGCCCGGAACGCATCACCCTGGCCATGACCGGTGCCTCGGGCGCCCAGTACGGCCTGCGCCTGCTGGACTGCCTGGTGCGTGAGGACCGGGAGGT GCATTTTCTGATCTCCAAGGCTGCGCAGTTGGTCATGGCCACGGAAACCGATGTGACCCTGCCCCCCAAACCGCAGACCATGCAGGCCTTCCTCACCGAA TACACCGGTGCGTCGGCGGGGCAGATCCGCGTTTATGGCAAGGAGGACTGGATGTCGCCGGTGGCCTCGGGCTCCGGCTCGCCGGCGGCGATGGTAGTGG TGCCGTGCTCCACCGGTACCTTGTCGGCGATTGCCACCGGTGCCTGCAACAACCTGATCGAGCGCGCCGCGGACGTGACCCTCAAGGAGCGCCGGCAGTT GATTCTGGTGCCTCGCGAGGCGCCGTACTCCAGCATTCACCTGGAGCACATGCTCAAGTTGTCGAACATGGGCGTGACCATTCTACCGGCCTCGCCGGGC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLQAQGIELTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFAVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGAGGQWQVKLLSADGSAFEVMFEGVSQGVVEWELTGQHNVANALATLAAARHVGVVPSM GIAGLSAFKSVKRRMEKVAEVHGVTIYDDFAHHPTAIATTLDGLRKRVGDAPVIAIIEPRSNSMKLGAHRDGLPESVNQADQVIWYAPANLGWDLAATAA LCTVPSIVSDSLEGIIERVKSQAKPGTQVVIMSNGGFGGLHGKLAEALR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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