Pseudomonas fluorescens AU20219, AA067_RS05435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU20219 Contig_58, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCCTCGATGAAGATCTGCGAGAGCTTGGGGTCCTGGCTGCCCAGCGTCATGATCAGGCGGTGCAGGTTCACTGACTCGTCGCTGTTGATCAGATGGTG AAAGCCCCGGGCGATATTCAGCAGAACATTGTCCACCGGCGTGTCGGGGGTCAGTTCGTAGATCAGCGTGGGCAGCTGTTCTTCGCATTTGGCCACCACG GCGGCGGTGAACAAGGTCTCCTTGTCGTTGAAATGGCTGTAGACCGTGAGCTTTGAAACCCCGGCCTCAGCGGCGACCGCATCCATGCTGGTACTGGCGT AGCCATTGCTCAAAAACAGGACTTTGGCTGCTTCGAGAATGGCCTGGCGCTTGGCCAGATCCTTGGGCCTGCCTGGCCCAACGTTTGCGGAAATATTGTC GGACATTTTTTCGCTGTTAATACTGGACTGGTGAGTTTGCTATTAATAACATACCGGCCAGTATAAATATTCCAAGCACCATTAGCGAAAGGTCGCCGCC
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| DNA Sequence for Gene |
>AA067_RS05435
ATGTTCCGCTATGCCTTGCCAGTCAGCCTGGCTTTTTTTCTGTCTGCTTGTGGGCACGAAGAGCCCGTTCAAATTGGCATCCGGCCGGCCATGGTGGTCC AGCCAGAGCCTTCGGCACGGGCTTCTGACAGTTACCCGGGCGAGGTGCGAGCCCGCTACGAGCCGGACCTGGCATTCCGTATCGGCGGCAAGGTCAGCCG ACGGCTGGTGGAGGAGGGCGAGCGGGTCAAGGCCAACCAGCCTCTGGCGGAGCTCGACCCGCAGGACGTGCGCCTGCAACTTGAAGCCACCCGGGCCCAG GTCACCGCGGCCAGCGCCAACCTCAACCTGGTGCGCGCCGAGCGTGATCGCTACAAGACCCTGCTGGAGCGGCAGATGGTCAGCCATTCCCAATATGACA ACGCCGAGAACCTCTACCGTTCCGGCGAAGCCCGCCTGAAGCAGATCAAGGCCGAGTTCGATGTGGCCAACAACCAGGCCGGCTACGCGGTGCTGCGCGC GCCACAGGACGGTGTAGTGGCCAAGCGTGCGGTGGAGGTGGGGCAGGTGGTGGCGGCCGGGCAGACGGTCTTCACCCTGGCCACCGATGGCGAGCGTGAG GTGCTGATCAGCTTCCCCGAGCAGAACTACGGCCGTTTCAAGGTCGGCCAGCCGGTCTCGGTGGAACTCTGGACTCAGCCGGGCCAGCGCTTCGACGGGC GCATCCGCGAGCTGTCGCCCGCTGCCGATCCCAAGTCCCGGACCTTCGCCGCGCGCATTGCCTTCACTGCCGGCAAGGTGCCCGCCGAGCTGGGCCAGAG CGCCCGGGTGTTCATCCAGAGCGGTGATGCGGTGCCGCTGTCGGTGCCGCTGTCGGCGTTGTCCGCGGAAGGCGGGGCGACTTATGTCTGGCGGGTCGAT GCCAACAATACCCTGCACAAGACCCCGGTGCGGGTCGGCGCCTTCGGCGAGAAGAGCGTGCCGGTGCTCGAAGGGCTGAGCGCCAGCGATTGGGTGGTGG CCGCGGGGGTGCATGTGCTCCATGAGGGCTTGCAGGTGCGCCCGGTGGATCGCTCCAACCGCGTGGTCAATCTGGCGGCCAAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCCGATGGGTTTCAACCTTTCCGCCTGGGCGTTGCGCAATCGCCAGATCGTTCTGTTCCTGATGCTGCTGCTGGCCATTGTCGGTGCGCTGTCCTACA CCAAGCTGGGGCAGAGCGAGGATCCGCCTTTCACCTTCAAGGCCATGGTCATCCGCACCAACTGGCCCGGGGCTACGGCCCAGGAAGTGTCGCGCCAGGT TACCGAGCGCATTGAAAAGAAACTCATGGAGACCGGCGAGTACGACCGCATTGTGTCTTTTTCCCGCCCCGGGGAATCCCAGGTGACGTTCATCGCCCGG GACTCGATGCACTCCAGCGAGATTCCCGAGCTGTGGTACCAGGTCCGCAAGAAGATCAGCGATATCCGCCAGACCCTGCCGCCCGGTATCCAGGGGCCGT TCTTCAACGATGAGTTCGGCACCACGTTCGGCAATATCTATGCGTTGACCGGGCAGGGCTTCGACTACGCGGTGCTCAAGGACTACGCCGACCGCATCCA
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| Amino Acid Sequence |
>RND transporter
MFRYALPVSLAFFLSACGHEEPVQIGIRPAMVVQPEPSARASDSYPGEVRARYEPDLAFRIGGKVSRRLVEEGERVKANQPLAELDPQDVRLQLEATRAQ VTAASANLNLVRAERDRYKTLLERQMVSHSQYDNAENLYRSGEARLKQIKAEFDVANNQAGYAVLRAPQDGVVAKRAVEVGQVVAAGQTVFTLATDGERE VLISFPEQNYGRFKVGQPVSVELWTQPGQRFDGRIRELSPAADPKSRTFAARIAFTAGKVPAELGQSARVFIQSGDAVPLSVPLSALSAEGGATYVWRVD ANNTLHKTPVRVGAFGEKSVPVLEGLSASDWVVAAGVHVLHEGLQVRPVDRSNRVVNLAAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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