Pseudomonas fluorescens AU20219, AA067_RS00665
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU20219 Contig_40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCCGGGATGGCGAGCGCGATGCGGTGTTCAACGTCTACGAGTCGCTGCTGATGCAGCCACCGGGCCAGGAAACCATCCACATCAGCCTGCTGGACA ATCCCAAGGTGACCACCACCGGCAAGGTCCGCGAGGTGACGCCGGTGGTCTCGGCCCAGAGCGGCACGGTGCAGGTCAAGGTGGTGCTCGATTCGTTGCC GGCGGGCATGGACCTGGGCTCGGTGGTCAGCGCCACCGCCCGGGCCCATGGCAAGGCCAGTGTGGTGCTGCCCTGGTCGGCCCTGACCAAGAACCTCAGC GAGCCGGCCGTGTGGCTGGTGGGCGAGGACGGCAAGACGGCCCTGCACACGGTGAAGGTCGGGCGCTACCTCACCGGCAAGGTGATCATCAGCGACGGCC TCAAGGGCGGCGAGAAAGTGGTGGTGGCGGGTGGGCAGTTGCTGCACCCGGGGATGTTCGTGGAGATCGCCTCGCAAACGAGCGATCAGGGAGCACAGCC
|
|
| DNA Sequence for Gene |
>AA067_RS00665
ATGAAGCGCCTGCTGCCGTTGTTGTGTGCCAGCGCCTTGTTGCTGGGCTGCTCCAGGGAAGAGCCGGCGCCGGAGCCGGTGCGCCCGGTGCTGTCGTTCC GGGTGGCGCCCCAGGCCGAGGAAAGCCTGGGGCGTTTTGCCGGCACCATCCAGGCCCGCTACGAGACCAACCTGGGCTTCCGGGTGCCGGGGCGCATTGC CAACCGCAATGTCGATGTCGGTACCGAAGTGGGCCCCGGGGACCTGCTGGCGACTCTGGACCCCACCGACCAGCAGAACCAGCTGCGGGCCGCCCAGGGC GACCTGGCCAAGGTCGAGGCGCAGTGGATCAACGCCCAGGCCAATGCCCGGCGCCAGCAGGAGCTGTTCGATCGCGGCGTGGGCGCCCAGGCGCAACTGG ACATCGCCCAGACCGACCTGAAGACCACCGGTGCCTCCCTGGACCAGGCCAAGGCCTCGGTGCGCCAGGCCCGGGACCAGCTCAACTACAGCGAACTGCG CAGCGATCACGGCGGCGTGATCACCGCCTGGAACGCCGAGGCCGGGCAGGTGGTGACCGCCGGCCAGCAAGTGGTGACCCTGGCCCGGCCGGAGATCAAG GAAGCGGTGATCGACCTGCCGGCCAGCCTGGTGGACCAGTTGCCGGCCGGGGTGGAATTCAAGGTCGCGGCACAGCTGGATCCGAGCATCATCACCACCG CCACGGTGCGTGAGATCGAACCCCAGGCCCAGAGTGCAACCCGTACCCGCCGCGCCCGCCTGACCCTCAAGGACACGCCCGAGGCCTTTCGCCTGGGCAC CGCCATCAGCGTGACCCTGAGCTCGGCCATCGAGCCGCGCACCGAGGTGCCGTTGACCGCCCTGCAAGAGGTGGAGGGCAAGACCCGGATCTGGATCGTC GACCCCCAGAGCCAGACGGTGGCTCCGCGTGAGGTCACGGTGCTCAGCCGCGACAGCGCTTCGGCGTTGATCAGCCAGGGCGTCAAGCCCGGCGAGCGGG TGGTCAGTGCCGGGGTCAACAGCCTCAAGCCGGGGCAGAAAGTCAAAATCGATGAGGACCGCGCACAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCCCGACAGTAAAGGGAGCTTCAACCTGTCCGAGTGGGCGATCAAGCATCAGTCCTTCGTCTGGTACCTGATGTTCGTCGCGCTGCTGATGGGCGTGTT TTCCTACCTGAATTTGGGGCGCGAGGAAGACCCGTCCTTCACCATCAAGACCATGGTCATCCAGACCCGCTGGCCCGGCGCGACCCAGGAAGAAACCCTG AAGCAGGTCACCGACCGCATCGAGAAGAAACTCGAAGAGCTGGATTCGCTGGACTACGTGAAAAGCTACACCCGCCCCGGCGAATCGACGGTGTTCGTCT ACCTGCGCGACACCACCAGTGCCAAGGACATTCCCGAGATCTGGTACCAGGTGCGCAAGAAGATCAACGACATCCGCGGCGACTTTCCCCAGGGCCTGCA GGGCCCGGGGTTCAACGATGAGTTCGGCGATGTGTTCGGCTCGATCTACGCCTTCACCGCCGATGGCCTGAGCATGCGCCAGCTGCGCGACTACGTGGAG
|
|
| Amino Acid Sequence |
>RND transporter
MKRLLPLLCASALLLGCSREEPAPEPVRPVLSFRVAPQAEESLGRFAGTIQARYETNLGFRVPGRIANRNVDVGTEVGPGDLLATLDPTDQQNQLRAAQG DLAKVEAQWINAQANARRQQELFDRGVGAQAQLDIAQTDLKTTGASLDQAKASVRQARDQLNYSELRSDHGGVITAWNAEAGQVVTAGQQVVTLARPEIK EAVIDLPASLVDQLPAGVEFKVAAQLDPSIITTATVREIEPQAQSATRTRRARLTLKDTPEAFRLGTAISVTLSSAIEPRTEVPLTALQEVEGKTRIWIV DPQSQTVAPREVTVLSRDSASALISQGVKPGERVVSAGVNSLKPGQKVKIDEDRAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|