Pseudomonas fluorescens AU20219, AA067_RS00660
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU20219 Contig_40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGCTGATCTGTTCCGGCCCGGCCCAATACGTCGATTCCAGCCCGCCTTCCTTGGCCAGGGCGTTGACCACGCCGCCCTGGGCGGTCTCCGCCAGCAG GCGCAGGGCGCGGTACAGGTTGGACTTGCCGCTGCCGTTGGCGCCGGTGACCAGGTTCAGCCGACCCAGGGGAATCACCAGTTTGTTGATGGAGCGGTAG TTGGCCACCGCCAGGGTCTTGAGCATGCCGGATCTCCTGTTGCGTGGCGCGCAGTGTGCCTCATTTGTAGAGCGGGAGCTTGCTTGCGGCTGCCCTTGAA ACCGCCGTTGTGCTTGCCAGGGCAGAGCGCGTCGAGGGCCGTTGCGGTTGCTGCGCCTCGGGGCGCCGGCCGGCCGAACGGGAGCAAGTTCGCGCCACCG AAACCCTCACTGATGAGACTGGCGTGCAGCGGTTGAACCCTGTTCTAAGCTCACAGTCGTAACGTCACTGGCGAGACAGCATCACGCAAAAGGAGCCTGC
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| DNA Sequence for Gene |
>AA067_RS00660
ATGGCTGCGTTCAATTCGAAGTGGATAGTGGGATTGACCCTGTTGCTGCTGCTTGGCGGCTGCGGGGCGGAAAAGCCCGGGGAAAAGGAGCGCCCGCGGG TGCGCATCCTGGAGGTGCAGAGCAGTGACTTCGCCCCTTCGGTGACCCTGACCGGTGACGTCCAGGCCCGGGTGCAGACCGAACTGTCGTTCCGCGTCGG CGGCAAGATCATCCAGCGCATGGTCGATGTCGGCGATCGGGTTACCGCGCAACAGGTGCTGGCCAAGCTCGATCCCAAGGACCTGCAGACCAATGTCGAT TCTGCCGCGGCCTCGGTGTTCGCCGAGCAGGCCCGGGTCAAGCAGGCCGGCGCGGCGTTTGTCCGCCAGCAGAAGCTCTTGCCCAAGGGCTACACCAGCC AGAGCGAATACGATTCGGCCCAGGCCGCCCTGCGCAGCAGCCAGAGCGCCTTGAGCGCGGCCCAGGCGCAACTGGCCAACGCCCGCGAGCAACTGAGCTA CACCGAGCTGGTGGCCGAGGCTCCTGGGGTGATCACCGCGCGCCAGGCCGAGGTCGGCCAGGTGGTACAGGCCACGGTGCCGATCTTCAGCCTGGCCCGG GATGGCGAGCGCGATGCGGTGTTCAACGTCTACGAGTCGCTGCTGATGCAGCCACCGGGCCAGGAAACCATCCACATCAGCCTGCTGGACAATCCCAAGG TGACCACCACCGGCAAGGTCCGCGAGGTGACGCCGGTGGTCTCGGCCCAGAGCGGCACGGTGCAGGTCAAGGTGGTGCTCGATTCGTTGCCGGCGGGCAT GGACCTGGGCTCGGTGGTCAGCGCCACCGCCCGGGCCCATGGCAAGGCCAGTGTGGTGCTGCCCTGGTCGGCCCTGACCAAGAACCTCAGCGAGCCGGCC GTGTGGCTGGTGGGCGAGGACGGCAAGACGGCCCTGCACACGGTGAAGGTCGGGCGCTACCTCACCGGCAAGGTGATCATCAGCGACGGCCTCAAGGGCG GCGAGAAAGTGGTGGTGGCGGGTGGGCAGTTGCTGCACCCGGGGATGTTCGTGGAGATCGCCTCGCAAACGAGCGATCAGGGAGCACAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGCCTGCTGCCGTTGTTGTGTGCCAGCGCCTTGTTGCTGGGCTGCTCCAGGGAAGAGCCGGCGCCGGAGCCGGTGCGCCCGGTGCTGTCGTTCCGGGT GGCGCCCCAGGCCGAGGAAAGCCTGGGGCGTTTTGCCGGCACCATCCAGGCCCGCTACGAGACCAACCTGGGCTTCCGGGTGCCGGGGCGCATTGCCAAC CGCAATGTCGATGTCGGTACCGAAGTGGGCCCCGGGGACCTGCTGGCGACTCTGGACCCCACCGACCAGCAGAACCAGCTGCGGGCCGCCCAGGGCGACC TGGCCAAGGTCGAGGCGCAGTGGATCAACGCCCAGGCCAATGCCCGGCGCCAGCAGGAGCTGTTCGATCGCGGCGTGGGCGCCCAGGCGCAACTGGACAT CGCCCAGACCGACCTGAAGACCACCGGTGCCTCCCTGGACCAGGCCAAGGCCTCGGTGCGCCAGGCCCGGGACCAGCTCAACTACAGCGAACTGCGCAGC
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| Amino Acid Sequence |
>RND transporter
MAAFNSKWIVGLTLLLLLGGCGAEKPGEKERPRVRILEVQSSDFAPSVTLTGDVQARVQTELSFRVGGKIIQRMVDVGDRVTAQQVLAKLDPKDLQTNVD SAAASVFAEQARVKQAGAAFVRQQKLLPKGYTSQSEYDSAQAALRSSQSALSAAQAQLANAREQLSYTELVAEAPGVITARQAEVGQVVQATVPIFSLAR DGERDAVFNVYESLLMQPPGQETIHISLLDNPKVTTTGKVREVTPVVSAQSGTVQVKVVLDSLPAGMDLGSVVSATARAHGKASVVLPWSALTKNLSEPA VWLVGEDGKTALHTVKVGRYLTGKVIISDGLKGGEKVVVAGGQLLHPGMFVEIASQTSDQGAQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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