Pseudomonas fluorescens AU11114, AA065_RS25400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11114 Contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGCTCAGGGCGGCCCGCTGATGCACGTCATCGCCGGTAAAGCCGTGTGCTTCAAGGAAGCGCTGGAGCCTGGCTTCAAGGCATATCAGCAACAAGTGA TCGACAACGCCCAGGCGATGGCGAGCGTATTTATCAAACGTGGCTACGATGTAGTGTCCGGCGGGACTGACAACCATCTGTTCCTGGTCAGCCTGATCCG TCAGGGCCTGACCGGCAAAGACGCCGACGCCGCCCTTGGCCGTGCACACATCACCGTCAACAAGAACGCGGTGCCAAACGATCCGCAGTCGCCGTTCGTG ACGTCCGGTCTGCGCATTGGCACCCCGGCGGTCACGACTCGCGGCTTCAAAGTGACGCAGTGCACTGAACTGGCCGGCTGGATCTGCGACATCCTCGATA ACCTTGGCGATGCCGATGTTGAGGCGGATGTGGCGAAAAACGTCGCGGCCCTGTGCGCTGACTTCCCGGTTTATCGCTGAGCGTTCTGGAGTACATGACT
|
|
| DNA Sequence for Gene |
>AA065_RS25400
ATGCAACGCTATTCGGGCTTCGGCCTCTTCAAACACTCGCTCAGCCACCACGAAAACTGGCAGAAAATGTGGCGCACGCCGACCCCGAAAAAGGTCTACG ACGTGGTCATCGTCGGCGGCGGCGGGCACGGTCTGGCAACTGCTTATTACCTGGCAAAAGAGCACGGCATCACCAACGTCGCCGTGGTCGAGAAAGGCTG GCTGGGCGGCGGTAACACCGCGCGCAACACCACCATCGTGCGTTCCAACTATCTGTGGGACGAGTCGGCGCATCTGTACGAACACGCGATGAAATTGTGG GAAGGCCTGTCGCAGGACTTGAACTACAACGTGATGTTCTCCCAGCGCGGCGTCTACAACCTGTGCCACACCTTGCAGGATATCCGCGATTCCGAACGCC GGGTCAGCGCCAACCGCCTCAACGGCGTCGATGGCGAGTTGCTCAACACTGAGCAAGTCGCCAACGAGATTCCGTACCTCGATTGCTCGAAAAACACTCG CTACCCAGTGCTCGGCGCAACCGTCCAGCGTCGCGGCGGCGTCGCCCGTCACGATGCCGTGGCGTGGGGCTTTGCCCGTGCTGCTGATGCTTTGGGCGTG GACTTGATCCAGCAGACCGAAGTCATCGGTTTCCGCAAAGAAAACGGCGTGTGTATCGGCGTTGAAACCAACAAGGGTTTCATCGGCGCCAAGCGCGTCG GCGTGGTGACGGCCGGTAACTCCGGGCACATGGCCAAACTCGCCGGTTTCCGTCTGCCAATCGAATCCCATCCGCTGCAAGCACTGGTGTCCGAGCCGAT CAAACCGATTATCGACAGCGTGATCATGTCCAACGCCGTGCACGGTTACATCAGCCAGTCCGACAAGGGCGACCTGGTGATCGGCGCCGGTATCGACGGC TACAACGGTTACGGCCAGCGTGGTTCGTACCCGGTGATCGAGCACACCATTCAGGCCATCGTCGAGATGTTCCCGGTGTTGTCCCGTGTACGCATGAACC GCCAGTGGGGCGGCATCGTCGACACCACGCCGGATGCTTGCCCGATCATTTCGAAAACCCCGGTGCCGAACATGTTCTTCAACTGCGGTTGGGGCACCGG TGGCTTCAAAGCAACACCTGGCTCGGGCAACGTGTTTGCCGCGAGCCTGGCCAAGGGTGAAATGCACCCGTTGGCCGCACCTTTCTCCATCGACCGTTTC CACAACGGTGCGTTGATCGATGAACACGGCGCTGCTGCGGTTGCCCACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAGGAGAAATCCCCATGTTGCATATCTTCTGTCCTCACTGCGGCGAGCTGCGCTCCGAAGAGGAATTCCACGCATCCGGTCAGGCGCACATTCCGCGTCC GCTGGACCCTGCAAGCTGCACCGATGCGGAGTGGGGCGACTACATGTTCTTCCGCGATAACCCGCGCGGTCTGCACCACGAGCTGTGGGATCACGTCGCC GGTTGCCGCCAGTACTTCAACGTCACCCGCGACACCGTGACCTACGAGATTCTCGAAACCTACAAGATCGGCACCAAGCCGCAATTCACCGACAAGGCTG ATGCTGCGAAAACAGCCACGACGGCGCTGGGAGAGAAGGTATGAGCCAGACCAATCGCCTGTCCAACGGTGGACGGATCGACCGCAACAAAGTGCTGAGC TTCACCTTCAACGGTCAGAGCTACAAAGGCTTCGAGGGTGACTCGCTGGCCTCGGCGCTGATCGCCAACGGCGTCGACATCATCGGCCGCAGCTTCAAGT
|
|
| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQKMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDIRDSERRVSANRLNGVDGELLNTEQVANEIPYLDCSKNTRYPVLGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGVCIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG YNGYGQRGSYPVIEHTIQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPVPNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSIDRF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|