Strain | Pseudomonas fluorescens strain AU11114 Contig_67, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCCAACAGCAACAGTTACTCCATCGAATACAAGGAGTTCGGCATTCGTTTGACGCTGACGCCGACCGTGGTCAGCAACAACCGCATCGCGCTCAAAGTCG CCCCTGAAGTCAGCGAGCTGGACTACAACAATGGCGTGACCATCGGCGGCACCAAAGTGCCGGCGTTCAACATCCGCCGCACCGACACCAGCATCTCTCT GGCCGACGGTGAAAGCTTTGTGATCAGCGGGTTGATCAGCACGCGCAACGCCTCTGAAGTGAATAAATTTCCCGGCCTTGGCGACATCCCGGTCCTGGGC GCATTTTTCCGCAACTCGTCGATCAATCGCGAAGAGCGCGAGTTGCTGATGATCGTCACCCCGCACCTGGTGCAGCCACTGGCTGCCAATGCACCGCTGC CTTCGCTGCCGGGGGAGAAACTGCGCAACTACGACCCGAACTGGTATCGCCTGTACTTCCTCGAAAACGGCAACTTCGATAAACGCAGCGGATTATCGCA
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DNA Sequence for Gene |
>AA065_RS03175
ATGAGCCAGAACCTGAGTCAGACCTTCCTCGCCATCACCCGCAACGACACCGACCTTGAATGGCTGCAAGGCGCGCTGGCGCCACTCGGTCAGGTGGTCA GCGCCGGTGGCGGCAGCCTTGACGAGTTGCTGGCGCTGGTCGATGTGACCTTCGCCAGCCTGGTGTTCGTGGGACTTGATCGTGATCATCTGGTGGCGCA AAGCGCCCTGATCGAAGGAGTGCTGGAAGCCAAGCCGATGCTCGCCATCGTCGCCCTCGGTGACGGCATGGACAATCAGTTGGTGCTCAACGCAATGCGC GCCGGCGCGCGGGATTTTGTCGCCTACGGTTCACGCTCCAGCGAAGTTGCCGGGCTGGTGCGACGCCTGAGCAAACGTCTGCCGGCGGTGACGCCGAGCA CTCAGCTCGGTGGTTTGACGGTGCTCTACGGCGTACAAAGCAACGCCGACGGCGCACTGCTCGCCAACCACATGGCGCTGGTGGTGCAGAAGAGCGGCCA GCAAACCCTGCTGCTCGATCTGGGCCTGCCGCGCGGCGACAGTCTGGCCTTGCTCGGGCTTGAGAGTTCGTTCCATTTCGGCGACGCGCTGCGCCACTTG CGGCGGCTCGATACGACCCTGATCGACAGCGCCTTCACCAGCGCCGAAGCGGGCCTGCGCATTCTTGCCTACGCCAACGGCGACGAGCCGCTGGAGCGCA CCAGCGCCGCCGAGTTGTACATGTTGCTCAGCGCCTTGCGCCAGCACTTCCAGCACATCGTGGTCAACCTCACCGGTCAGCCCGACAGCGAAGCGCTGCG CACCTTCGTCAGCCATTGCGACAAGCTGATCTGGTACACCGACCAGAACGTTCTCGACTGTCGGCGCAACCTCGCGGTGCTCAATCTGTGGCGCGAAAAA GGCATGAAACTCGACCATGGCCGGTTGCTGGTGGATCGCTACCTGCGCAACGTCGCGCCGGATTCCGACACCCTCGGCAAGACCTTCGGCCTGGAGGTCA TCGCGGTGCTCGCCTACAGCCCGGAGATTCGTCTAAACGCAAAAAACCAGGGCGTCAGCCTGTTCGAACTGGCCCCGCGTGAGGCCATCAGCCAGAGCCT GCGTACCCTCGGCGAACGCCTGGCGAAACGCTCCGAAGGCCTGGCCAAACCCAAAGTCAGCTGGTTCGACCGCTTGCGAGGCACCTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACGGCGAGCAATTGTTCGGCGGGTCGCAGCGCCCCGCGTCCGGCAACACCGATCACGATGGCCTGAAACTGGTGCTGCACCGTTACATCATCGACGCCAT CGAAGAGTCGGGGAAAAACCTGCTGGAAGGCTCGCGGCAGGTGCTTTCGCAATTCGTCATCGACAAGGTCGCCGAATACATCGCACGCCTGCATCTGGCG ATTTCCCGTTATGAGATGGAGCGCCTGGCCGAAGAAATCGTCGATGAGCTGACCGGTTTCGGCCCGCTGGAAGTGCTGCTGCGCGACAGCGCGGTGACCG AAATTCTGGTCAACGGCCCGCACCGGGTGTTCATCGAACGCGACGGCGTGCTGCACCTGAGCGACCTGCGCTTTATTGATGCGCACCACGTTGAACGAGT GATGCAGCGCATTCTCGGGCCACTCGGTCGGCGTCTCGATGAGTCGTCGCCGATGGTCGATGCACGCCTGCCCGATGGCAGTCGGGTCAACGCCATCATC
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Amino Acid Sequence |
>pilus assembly protein
MSQNLSQTFLAITRNDTDLEWLQGALAPLGQVVSAGGGSLDELLALVDVTFASLVFVGLDRDHLVAQSALIEGVLEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPAVTPSTQLGGLTVLYGVQSNADGALLANHMALVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALRHL RRLDTTLIDSAFTSAEAGLRILAYANGDEPLERTSAAELYMLLSALRQHFQHIVVNLTGQPDSEALRTFVSHCDKLIWYTDQNVLDCRRNLAVLNLWREK GMKLDHGRLLVDRYLRNVAPDSDTLGKTFGLEVIAVLAYSPEIRLNAKNQGVSLFELAPREAISQSLRTLGERLAKRSEGLAKPKVSWFDRLRGTS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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