Pseudomonas fluorescens AU11114, AA065_RS01030
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11114 Contig_60, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGGTGAGCGCGACGCGGTGTTCAACGTCTACGAGTCGCTGTTGGCCGGACCGCCGACGGATCGCTCGATTGAAGTCAGCCTGCTCGATAATCCGAAAA TCAAAACCACCGGCACGGTGCGTGAAATCACTCCGGCGGTATCCGCGCAGACCGGCACCGTGCAAGTCAAAGTCACCCTCGATAGCCTGCCGGAAGGCAT GCAGCTCGGCTCGGTGGTCAGCGCCACGGCCAAGACGCCCGGCCAATCCGCCGTGGAACTGCCGTGGTCGGCGCTGACCAAAAACCTCAGCGAGCCGGCG GTGTGGATCATCGACGGCGAGGGCCGCGCGCAACTGCACACGGTGACGGTCGGGCGTTACCTGACGGGCAAAGTCATCGTCAGCGACGGCTTGAAGGCTG GCGACAAAGTCATCATCGCCGGCGGCCAGTTGCTGCATCCGGGCATGAAAGTCGAGATTGCCGAGAACACTTATAAGGATCTGCAAGTGGGAGCCCAGCC
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| DNA Sequence for Gene |
>AA065_RS01030
ATGACGCGCCTGTTGTTGCTCACGGCGCTGCTGGCGCTGGCCGCGTGCTCGGAAAAAGAAGCGCCGTCGGAGCCGGTGCGTCCGGTGTTGTCGGTGGAAG TGAAAACCCTCAATCAGGAAGACCTCGGCCGTTTTGCCGGGAGCATTCAGGCACGCTACGAAAGCAACGTTGGTTTCCGTATTCCGGGGCGTATCGCCAG TCGTAACGTCGATGTCGGCGCCGAAGTCGAGAAGGGCGCCTTGCTCGCCACACTTGACCCAACCGATCAGCAGAACCGGTTGCGTGCCGCCCAAGGGGAT CTGGCGCGCATTGAAGCGCAGTACATCAATGCCCAGGCCAACGCCCGTCGCCAGCAGCAATTGTTCGACCGTGGCGTCGGTGCGCAGGCGCAACTGGACA TCGCCCAAACCGACCTTAAAACCACCAAGGCTTCGCTGGATCAAGCCAAGGCGTCACTGAGCCAGGCCAAGGATCAGCTCGACTACGTGCAACTGCGCAC CGATCACAAAGCCGTGGTCACCGCGTGGAATGCCGAGGCCGGCCAAGTGGTTACCGCCGGCCAGCAAGTGGTCACGCTGGCGCAACCGGACATCAAGGAA GCGGTGATCGACCTGCCCGATACCCTGGTCGATCAACTGCCACCGGATGTTGTGTTTCTGGTCGCTGCGCAACTCGACCCGAGCATCAACACCACCGCGA CCATCCGCGAGATCGAACCCCAGGCCCAGAGCGCCACCCGCACCCGGCGTGCACGCCTGACGCTCACCGAGACGCCACCCGGTTTTCGTCTCGGCACAGC GATCAGCGTCACCCTCAGTTCGGCAATCAAACCTCGTCTCGAATTGCCGGTCAGCGTGTTGCAGGAAGTCGACGGCAAAACACGGATCTGGGTCATCGAC CCGCAAGCGCAAACCGTCTCGCCACGTGACGTCACCCTGATCAGTCGCAATGACAGCACCGTGGTGCTGTCAGGCGGCGTCAAGGCTGGCGAGCGGGTGG TAACGGCCGGTGTGAACAGCCTCAAACCGGGGCAGAAAGTCAAAATCGACGAGGACAGTCCACGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGGCCTTTCAACCTATCCGAATGGGCTCTGAAACATCAGTCGTTCGTCTGGTACCTGATGTTCGTCGCGCTGCTGATGGGCGTGTTCTCGTACATGAA CCTGGGTCGCGAGGAAGACCCGTCGTTCACCATCAAGACCATGGTCATCCAGACCCGCTGGCCGGGTGCGACGCAAGAGGAAACCCTCAAACAGGTCACC GACCGCATCGAGAAAAAACTCGAAGAACTCGACTCCCTCGACTACGTGAAAAGTTACACGCGACCCGGCGAATCCACGGTGTTTGTGTACTTGCGCGATA CCACCAGCGCCAAGGACATCCCGGACATCTGGTATCAGGTGCGCAAGAAGATCAACGACATTCGTGGCGACTTCCCCCAAGGCCTGCAAGGGCCGGGGTT CAACGATGAGTTCGGTGATGTGTTCGGCTCGGTGTATGCGTTTACCGCCGACGGCTTGTCGATGCGCCAGTTGCGCGATTACGTCGAACAGGTGCGTGCC
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| Amino Acid Sequence |
>RND transporter
MTRLLLLTALLALAACSEKEAPSEPVRPVLSVEVKTLNQEDLGRFAGSIQARYESNVGFRIPGRIASRNVDVGAEVEKGALLATLDPTDQQNRLRAAQGD LARIEAQYINAQANARRQQQLFDRGVGAQAQLDIAQTDLKTTKASLDQAKASLSQAKDQLDYVQLRTDHKAVVTAWNAEAGQVVTAGQQVVTLAQPDIKE AVIDLPDTLVDQLPPDVVFLVAAQLDPSINTTATIREIEPQAQSATRTRRARLTLTETPPGFRLGTAISVTLSSAIKPRLELPVSVLQEVDGKTRIWVID PQAQTVSPRDVTLISRNDSTVVLSGGVKAGERVVTAGVNSLKPGQKVKIDEDSPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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