Pseudomonas fluorescens AU11114, AA065_RS07635
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11114 Contig_58, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGAAGAGGGCGTCGGTGCTCGCGACAAGCTGTTCGTGCAGGAAGGCCGCAAGGTGTTCAAGGACGTTTGCCCGATGGTTGCCGAACTGATCGGCGAGCA TCTGCAAGAGAACCAGCTCAATGTCGGCGACGTTAAGCGCTTCTGGCTGCACCAGGCCAACCTGAGCATGAACCACCTGATCGTGCGCAAACTGCTGGGT CGCGAAGCGACGGAGGAAGAGGCGCCGGTAATCCTCGACACCTACGCCAACACCAGTTCGGCGGGTTCGGTCATTGCCTTCCACAAGTACCAGGATGACC TGGCCGCCGGTTCGCTGGCAGTGCTGAGTTCGTTCGGTGCGGGTTACTCGATCGGTAGCGTGATTCTGCGCAAGCGCTGAGTTTGCCTTGAAAAGATCGC AGCCTGCGACAGCTCCTACACTGACGGTTTCAAACCCGTTGTTGTAAGTGCTGCCGCGGGCTGCGATCTTTTGCGTCCTATCAACTGAAACGAGGCGTCA
|
|
| DNA Sequence for Gene |
>AA065_RS07635
ATGGCCGTTACGGACGACACCCAATTGCTTGAGCGTTTGCTGGCAGGCGAGCAGAAGGCTTTCAAGGAGCTGGTCACGACTTATCAGAGCGCCATGCGTG CCGTTGCATATGCGATCGTCGGCCAGCGTCATGTCGAGGAAGTGGTGCAGGACGCCTGGCTGTCGGTGGTGCGTCATATTGGCAGCTTCGAAGGGCGCTC CAGTCTCAAGACCTGGCTGCTGACCATCACTGCCAACTCGGCCAAGAGTCGCTACAAGCAAAATCGCCGTGAGGTGCTGCTCGACGACTTGCCGTCGCCC CACGGCACTATCGACGACGACCGTTTTTCGTCCGGCGACGGCCATTGGCTGGTCGCGCCTTTCGCCTGGCACCAGGACACTCCCGAGGCGTTGTTGACCG AAGGCGAACTGCGCGAGTGCCTGGAGCACACGTTGCTGAGCCTGTCGGAACTGCAAAGCAGCGTTTTGCTGTTGCGTGAGCGCCAGGGCGTGGAGCTCGA AGAGATCTGTAATCTTCTGGACATCTCGCTCTCCAATGTTCGGGTGCTGCTGCATCGGGCACGGTTAAAGGTCTTCGCGACCGTGGAACATTTTGAGGAG ACAGGAGAATGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CATGCAAGGAGCAAGTGGCACGATCCAGCGATTATCTCGATGGTCAGCTGAGTTTTGGCGAGAAGCTGATGGTGCGTCATCACCTGATGTTCTGCCGCAA CTGCCGGCGTTTCATACGCCAGATGCGGTTGATGCAGGCGACACTGAAGGCCATGCCGGAACAACCTGAAGAGGGTGTCGATGCACTGGCTGAACGCCTG GCTGCGCAACGACGGGAAGACAAGCCTCTGTAGGAGCTGCCGCAGGCTGCGATCTTTTGATCTTGAAWWWMAAGATCAAAAGATCGCAGCGTGCCGCAGC TCCTACAGTTTTTATGCGGTGCTAGTTCAATTGCAGGGTCTCATTGAACTGGCTGATCGCATCTACCACATGCCGCGAGCCTTGCTGGATTTCCAGAATC ACCTCGCCCGCCTCGTTCGCCAATTCAACCCCAAGCCCGGTGCGGCTCAAACTCGATTGCATGCTCGATACCGCGCTTAGCGACAGATCATGGTTCTTGC
|
|
| Amino Acid Sequence |
>RNA polymerase subunit sigma-24
MAVTDDTQLLERLLAGEQKAFKELVTTYQSAMRAVAYAIVGQRHVEEVVQDAWLSVVRHIGSFEGRSSLKTWLLTITANSAKSRYKQNRREVLLDDLPSP HGTIDDDRFSSGDGHWLVAPFAWHQDTPEALLTEGELRECLEHTLLSLSELQSSVLLLRERQGVELEEICNLLDISLSNVRVLLHRARLKVFATVEHFEE TGEC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|