Strain | Pseudomonas fluorescens strain AU11114 Contig_58, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TAACGTCCTGTGCCGCGCCAGCCATGAAAATCGCTGCGCCGTGGTTACTTCCCGCCTGACCCGCCATGGCGAGTGCAGCGCGCTGATCCTCGAGATCTCT GGCAGCTGGGACGCCCTCGCACGCCTGGAAGGCAGCCTGTCAGGTCTCGCCAAGAAGCACGCGTTCACCGTCAACGTGGTGCGCAGCGCACCATTGGAGA ACCGTCCGCAGGCGCTGCCATACGTGGCTTACGTCAGCTCCGCGTATCGTCCGGACATCATCAATGAGCTGTGCCAGTTCTTCATGGATCACAATGTCGA ACTGGAAAACCTGACGTGCGACACGTATCAGGCACCACAGACCGGTGGCACCATGCTCAACGCCACGTTCACCGTGACCCTGCCGGCCGGCACCCAGATC AGTTGGCTGCGTGATCAGTTCCTGGATTTCTCAGACGCCATGAACCTCGATGCCCTGATCGAACCCTGGCGCCCACAAAACCCAATGTAAGGAAGCTTTC
|
|
DNA Sequence for Gene |
>AA065_RS07375
ATGGCCGTTGTCATCGACCAACCGGTTGCGGATTTCGAAGCCCCTGCCACCAGCGGGCAAACCGTCAGCCTGTCTGCCCTGAAGGGCAAGCAAGTGGTGA TCTACTTCTATCCGAAGGACAGCACCCCGGGCTGCACCACCGAGGGTCAGGGCTTTCGTGATCAGTACGCGGCGTTCAAGGCCGCCAACACGGAAATCTT CGGTATCTCCCGCGACAGCCTGAAGTCTCATGAGAACTTCAAGGGCAAGCAGGAGTTTCCGTTCGAGCTGATCAGCGACAAGGACGAGGCTGTCTGCCAG TTGTTCGACGTGATCAAGCTCAAGAAGCTTTACGGCAAGGAATACCTGGGTGTTGATCGCAGCACGTTCCTGATTGATAAGGACGGCGTGCTGCGCCAGG AATGGCGTGGCGTGAAGGTACCGGGGCATGTCGATGCAGTTTTGGCTGCTGCTCAAGCGCTGAATAAAGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GGATCAAGAGATCGCAGCCTGCGGCAACTCCTGCATGTTCGATGTTCGATCGCATATTGTGCGGTGACACCGAAAACTGTGGAGCTGCCGCAGGCTGCGA TCTTTTGTTTTAAAGCAACGGCGCCACCACGGGTTCCTTACGCGGCCAGGCATCGAGCACTGCCTTGAACAGCGTCGCCAGAGGAATCGCAAAGAACACA CCCCAAAAACCCCACAACCCGCCGAACAGCAGCACCGCGCAAATAATTGCCACCGGGTGCAGGTTGACCGCTTCGGAAAACAGCAACGGCACCAGTACGT TGCCATCCAGTGTCTGGATGATTCCGTAGACCGCCATCAGATAAATGAATTGATCGCTCCAGCCCCACTGGAACAGCGCAATCAGCAGCACTGGCACGGT CACCACTACCGCGCCGACATACGGCACCACCACCGATAAACCGACCAGCAACGCCAGCAGCGCGGCATAGTTGAGCCCGAGTGCGACGAAAGCGATGTAA
|
|
Amino Acid Sequence |
>peroxiredoxin
MAVVIDQPVADFEAPATSGQTVSLSALKGKQVVIYFYPKDSTPGCTTEGQGFRDQYAAFKAANTEIFGISRDSLKSHENFKGKQEFPFELISDKDEAVCQ LFDVIKLKKLYGKEYLGVDRSTFLIDKDGVLRQEWRGVKVPGHVDAVLAAAQALNKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|