Pseudomonas fluorescens AU11114, AA065_RS20760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11114 Contig_51, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACACGCTTACTACATCGACTACCGCAACGTTCGTCCGAAGTATGTCGAAGCGTTCTGGAACCTGGTCAACTGGAAGTTTGTTGCTGAGCAGTTCGAAGGC AAAACCTTCACTGCTTAAGCTGCGCGCCAGATAAAAAACCCGGCCATGGCCGGGTTTTTTTATGCCTGCGATTTATATAGGAGCTACCGCAGGTTCGGGC GGCCTTCAGCAGCGCCTGCAGAAGAATAGCGTTGTTCTCACGAGCAATGCCGCCACCAGCCGCTTGCCGCCGTGCCACAGAGGACTAACATCCAACAGAA GAAAATTTGCCCCGCATCGCTCAAGTTGAGGGCTAAAACTACCGACATAGTGCAAATAGGGCTAATACTCCAGATGGCAGGGTGCAGGCCAAACCTTCAG GCAAATTATCCTGTGCCCGATTGTCCCTTTGACTGCCAACACGGGATTGCCAATACTCATGGCAAATTGACGCTACCCGCACGGAACAAGGAATAACCCT
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| DNA Sequence for Gene |
>AA065_RS20760
TTGAAGCTGGAACTCAAGAACAGCTTGTCGGTGAAGTTGCTCCGGGTCGTGCTCCTGTCAGCATTGATCGTCGGCGTTGTCTTGAGCTGCGCGCAGATTG TTTTCGACGCCTACAAGACCCGTCAGGCGGTGGCTGGTGACGCCGAACGGATCCTCGACATGTTCCGCGATCCGTCGACTCAGGCCGTTTACAGCCTTGA TCGGGAAATGGGCATGCAGGTAATCGAAGGCCTGTTCCAGGATGAGGCCGTGCGCCAGGCGTCCATCGGCCATCCCAACGAAGCCATGCTCGCGCAAAAG TCCCGCGAATTGCAGCATTCCAGCAGCCGCTGGTTGACCGACCTGATCCTGGGTCAGGAGCGCACGTTCACCACGCAACTGGTGGGACGCGGCCCCTACA GCGAATATTACGGCGACCTGAGCATCACCCTCGACACCGCCACCTATGGCGAAGGTTTTATCGTCAGCTCCGTGATCATCTTCATCTCTGGCGTTCTGCG TGCATTGGCCATGGGCCTGGTGCTGTATCTGGTTTATCACTGGCTGCTGACCAAACCGCTGTCGCGGATCATCGAGCACCTTACCGAGATCAATCCGGAC CGTCCCAGCGAGCACAAGATCCCGCAGCTCAAGGGCCACGAGAAAAACGAGCTGGGTATCTGGATCAACACCGCCAACCAGTTGCTCGAATCGATCGAGC GCAATACGCATCTGCGTCACGAGGCGGAAAACAGCCTGCTGCGCATGGCCCAGTACGACTTCCTAACCGGTCTGCCTAACCGTCAGCAATTGCAGCAGCA ACTGGACAAGATTCTGGTCGACGCCGGCAAACTGCAACGCCGGGTCGCGGTATTATGCGTGGGGCTGGACGACTTCAAGGGCATCAACGAGCAGTTCAGC TATCAGACCGGTGACCAATTGCTGTTGGCGTTGGCCGATCGACTGCGCGCCCACAGCGGTCGCCTCGGCGCCCTCGCCCGTTTGGGCGGCGATCAGTTCG CCCTGGTGCAAGCCGATATTGAACAACCCTACGAAGCGGCGGAACTGGCGCAAAGCATTCTCGATGACCTGGAAGCGGCGTTCGCCCTTGATCATCAGGA AATCCGCCTGCGCGCGACCATCGGCATCACCCTGTTTCCGGAGGACGGCGACAGCACCGAGAAGCTGTTGCAGAAGGCCGAACAGACCATGACGCTGGCC AAGACCCGCTCGCGCAACCGTTATCAGTTCTACATCGCCAGTGTCGACAGCGAGATGCGCCGCCGGCGTGAACTGGAAAAAGACCTGCGCGATGCGTTGC TGCGTGATCAGTTCTACCTCGTCTATCAGCCGCAGATCAGCTATCGCGATCACCGCGTGGTCGGTGTCGAGGCGCTGATTCGCTGGCAGCACCCGGAACA CGGCCTGGTGCCGCCAGACCTGTTCATCCCGCTGGCCGAACAGAACGGCACGATCATCGCCATCGGTGAATGGGTACTCGATCAGGCCTGCAAGCAATTG CGCGAATGGCACGATCAGGGCTTCGCCGATCTGCGCATGGCGGTCAATCTGTCCACCGTGCAATTGCACCACGCCGAGCTGCCACGGGTGGTCAACAACC TCATGCAGATGTACCGTCTGCCGCCGCGCAGTCTGGAACTGGAAGTCACCGAAACCGGCCTGATGGAAGACATCAGCACCGCTGCCCAGCACTTGCTGAG CCTGCGTCGCTCGGGGGCGTTGATCGCCATCGACGACTTCGGCACCGGCTATTCGTCGCTGAGTTATCTGAAAAGCCTGCCGCTGGACAAGATCAAGATC GACAAGAGCTTCGTACAGGATCTGCTGGACGACGACGACGATGCGACCATCGTTCGCGCGATCATCCAGCTGGGCAAAAGCCTCGGCATGCAGGTGATCG CCGAGGGCGTGGAGACCGCCGAGCAGGAGAGCTACATCATCTCCGAAGGCTGCCACGAAGGTCAGGGCTATCACTACAGCAAACCGCTGCCGGCGCGGGA GCTGAGCGTTTATCTCAAGCAGGCGCAGCGCAGCAACGCGGCAATCCTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGATCAAAAGATCGCAGCCTCGTTCCACTCGACAGCTCCTACATTTGAAATGCGTTCTCCTGCAGGAGCTGCCGCAGGCTCGGGCCGCGATCGGACGAT CTTTTGATCTTGAAGCGCGAATAAGAAATATTTCCAAGCACTACCCTTTACACATAATGCGAAAGATTTGCATTATGTCGCAGTTTTGCGCTTCCAGCGC GAGTCCACTCAACTACCGAAGCAGGATGTTCGCCATGATTCGTATGCCTCTGGCTACCGCCAGTTTGCTGGCCATCGCTATTTCTCTCGCCGGTTGCGGC GAAGGCAAAGACAAAGAAAAAGCCTCCGAAATGACGCCGGCTTCCAGCAGCGCTGCTCCAGCCCCTGCCGCTGCGCCTGCTCCTGCTGCCGGTAAAGTTG ACGATGCCGCCGCCAAAGCTGTGGTCGCGCACTACGCCGACATGGTCTTTGCCGTTTACAGCGATGCCGAATCCACCGCGAAAACCCTGCAAACTGCGAT
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGVVLSCAQIVFDAYKTRQAVAGDAERILDMFRDPSTQAVYSLDREMGMQVIEGLFQDEAVRQASIGHPNEAMLAQK SRELQHSSSRWLTDLILGQERTFTTQLVGRGPYSEYYGDLSITLDTATYGEGFIVSSVIIFISGVLRALAMGLVLYLVYHWLLTKPLSRIIEHLTEINPD RPSEHKIPQLKGHEKNELGIWINTANQLLESIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQRRVAVLCVGLDDFKGINEQFS YQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAAFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KTRSRNRYQFYIASVDSEMRRRRELEKDLRDALLRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACKQL REWHDQGFADLRMAVNLSTVQLHHAELPRVVNNLMQMYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQESYIISEGCHEGQGYHYSKPLPARELSVYLKQAQRSNAAIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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