Pseudomonas fluorescens AU11114, AA065_RS01870
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11114 Contig_49, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGCAAACCGATCCTGCAATTCGGCAAGCTCAACGTCGGTCTGAGCAAGCTGGAACCGGCCGGTCACTACGCACTGAAACTGACCTTCGATGACGGCCA CGACAGTGGCTTGTTCACTTGGGAATATCTCTATGAGCTGGGGCGACGTCATGACGCACTCTGGGCCGATTATCTGGCCGAGCTCAAAGCCGCTGGTAAA ACCCGTGATCCGGACGAGTCAATCGTCAAGCTGATGCTCTAGTCCGAGGGTCCTGCTCTTTAGAGGGCATTTTCTAACTTCATCTGTTTGAATGCTCCGC TGTGGCGTCGAGGATCGGCCCGCTTGCGAAAAAAATTAAACTCGGGTAACCAATGGAGCTGGCAAGTTCCCTGCAGTGCTCTACGACTGTAAAGCAGCTA TGCAGAATTAACGGTCACCCGAGCAGTAGTACCTGGCAATCGCTGTGGAACTGCACAGCAGATAGCCGGGTACTCGTCTCAGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>AA065_RS01870
ATGAGTAACAAGAATAACGATGACCTGAAGTATCAAGCCTCGGAAAACACCTTGGGGCTTAATCCCGTCGTTGGGCTGCGCGGAAAGGATCTGCTGGCCT CTGCTCGTATGGTGCTCAAACAGGCCATCAAACAACCGATCCATAGCGTCAGGCACGTCACCCATTTCGGCCTCGAACTGAAAAACGTGCTGTTTGGTAA ATCCGAACTGCAACCGGCAGGCGATGACCGTCGCTTCGCTGATCCTGCGTGGAGCCAGAACCCGCTCTACAAACGTTATCTGCAAACCTATCTGGCGTGG CGCAAGGAACTCCATGCCTGGATCGACGACAGCAGCCTGTCGCCCAAAGACATCGCGCGTGGCCACTTCGTCATCAACCTGATGACCGAGGCCATGGCCC CGACCAACACCGCAGCCAACCCTGCAGCAGTCAAACGCTTCTTCGAAACCGGTGGCAAAAGCCTGCTCGACGGCCTCTCCCATCTGGCCAAGGATCTGGT GCACAACGGCGGCATGCCGAGCCAGGTCAACATGGGCGCGTTCGAGGTCGGCAAAAGCCTGGGCGTGACTGAAGGCGCCGTGGTGTTTCGCAACGATGTG CTGGAGCTGATCCAGTACAGGCCGATCACCGAGCAAGTCCACGAGCGCCCACTGTTGGTGGTGCCGCCACAGATCAACAAGTTTTACGTATTCGACCTGA GCCCGGACAAGAGCCTGGCGCGCTTCTGCCTGCGCAACAACGTGCAGACCTTCATTGTCAGCTGGCGTAACCCGACCAAGGCGCAGCGCGAGTGGGGCCT GTCGACGTACATCGATGCGCTGAAAGAGGCGGTCGACGTGGTCACCGCGATCACCGGCAGCAAAGACATCAACATGCTCGGCGCCTGCTCCGGCGGCATC ACCTGCACCGCCCTGCTCGGCCACTATGCGGCGCTCGGCCAGAACAAGGTCAATGCCCTGACCCTGCTGGTCAGCGTGCTCGACACCACGCTGGACAGCG ACGTCGCCCTGTTCGTCGACGAACAGACCCTGGAGACCGCCAAGCGCCTCTCGTATCAGGCCGGGGTGCTTGAGGGCAAAGACATGGCCAAGGTCTTCGC GTGGATGCGCCCCAACGACCTGATCTGGAACTACTGGGTCAATAACTACCTGCTCGGCAACGAGCCGCCGGTGTTCGACATCCTGTTCTGGAACAACGAC ACCACACGGTTGCCGGCAGCGTTCCACGGCGACCTGATCGAGATGTTCAAAAACAATCCACTGATTCGTGCCAATGCACTGGAAGTGTGCGGCACACCGA TCGACCTCAAGCAGGTCACCGCCGATATCTATTCGCTGGCCGGCACCAATGACCACATCACCCCGTGGAAGTCTTGCTACAAGTCGGCGCAATTGTTTGG TGGCAAAGTGGAGTTCGTGTTGTCGAGCAGCGGCCATATCCAAAGCATTCTGAACCCGCCTGGCAACCCGAAGTCCCGATACATGACCGGCGAAGAGATG GCCGCGAATGCCGAAGACTGGCAAGAGAACTCGACCAAGCACACGGATTCCTGGTGGCTGCATTGGCAGGCGTGGCAGGCCGAACGGGCGGGCAACCTGA AAAAGGCCCCGACCAAACTGGGCAACAAGGCTTACCCGGCGGGCGAAGCATCGCCGGGCACTTACGTACATGAAAGATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCAAGCCACAGGCTACAAGCCGCAAGCTGAGCAAGTTCTGCTTGAAGCTTGCGGCTTGTAGCTGCTCCACTCTAACCCGAAGGGCCTGACGCATGCCG CAACCGTTCATATTCCGTACCGTCGAGCTGGATGGCCAGACCCTCCGCACGGCGGTACGCCCCGGCAAGCCTCACTTGACGCCCTTGCTGATTTTCAACG GCATCGGCGCCAACCTGGAGCTGGTGTTTCCATTTGTCGCGGCGCTGGACCCGGATCTGGAAGTGATCGCCTTCGACGTGCCCGGTGTCGGCGGCTCCTC GACGCCCAATCGGCCATACCGTTTTCCTGGCCTGGCCAAACTGACGTCGCGGATGCTCGATTACCTCGACTACGGTCAGGTCAATGTGATCGGCGTGTCG TGGGGCGGCGCGCTCGCGCAGCAATTCGCCTACGACTACCCCGAGCGCTGCAAGAAACTGGTGCTCGCGGCGACCGCTGCAGGTGCCGTGATGGTGCCGG
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDDLKYQASENTLGLNPVVGLRGKDLLASARMVLKQAIKQPIHSVRHVTHFGLELKNVLFGKSELQPAGDDRRFADPAWSQNPLYKRYLQTYLAW RKELHAWIDDSSLSPKDIARGHFVINLMTEAMAPTNTAANPAAVKRFFETGGKSLLDGLSHLAKDLVHNGGMPSQVNMGAFEVGKSLGVTEGAVVFRNDV LELIQYRPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRNNVQTFIVSWRNPTKAQREWGLSTYIDALKEAVDVVTAITGSKDINMLGACSGGI TCTALLGHYAALGQNKVNALTLLVSVLDTTLDSDVALFVDEQTLETAKRLSYQAGVLEGKDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIEMFKNNPLIRANALEVCGTPIDLKQVTADIYSLAGTNDHITPWKSCYKSAQLFGGKVEFVLSSSGHIQSILNPPGNPKSRYMTGEEM AANAEDWQENSTKHTDSWWLHWQAWQAERAGNLKKAPTKLGNKAYPAGEASPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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