Pseudomonas fluorescens AU11114, AA065_RS12950
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11114 Contig_42, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGTCCAGCTACATTCCGCCGGGCCATTCACTGGTTTTGCTGCGCCCACAGATCGAGGACTTGCTCGATACCCACCGCGACGTTCTGCACGACCTCAAT GCCGAACCCGGCATGCTCATTCCCGCGCAAACGGTCATGCACATCCTGCTCCTGCAACTGCTGTATTCGGTGCCCAGCGAACAGCAGCTCTATGAACAGC TGAGTTACAACCTGCTGTTCCGCTGGTTCGTGGGCCTGGGCCTGAACCAGAAAGTCTGGAGTTTCAACGTCCTCAGTCGCGACATCGCCACGCTGCTCAA CAACCCGCGTGCGGTGCAACTCATCCAGAAAATCATCGGCGAAGTGTTCTGCGGCGCCTTGCTGCAAATGCCCGAGTTCTCCTTGAACTTCGCGCTGTTG CACACCTGGCTCGGCAAACATGCCGGCGCCTCGATAGCCAATAACTGATGCAACAGGGCGTTTGAACGCCGACACGTCAACGCGAATGTCAGGGGGTAGT
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| DNA Sequence for Gene |
>AA065_RS12950
GTGGAACAGATTTTCACGTCACGGCTGGTGCTGTGGGGCTGGCTGCTGGTGACGGCGGGCGTGCAGCCGGCGTTGGCCGAAGAGGCTGGCGAAAGTGCAG CGGCGCAGCGTCTGGTCGACGTCAACGAATACTTCGTGCGCGGTAATACGGTGCTCGATGCACGGGCGATTGAAGAGGCGGTGTACCCGTTTCTCGGCCC GCAAAAAGCTCTGGCCGACATCGAAGGCGCGCGTGATGCGTTGCAGAAGGCCTATCAGGAACGCGGCTATCAATCGGTGTTCGTCGAGTTGCCGGAGCAA GCGGTAGCGGACGGCATCGTCTATCTGCAAGTCAGCGAAACCAAGGTCGGACGGGTGCGGGTGGTTGGCGCCAAACATTATTCGCCGCTGGACATCCGCG ACGACGTGCCGGCGCTGAAGGAAGGCGAGGTGCCGGACTTCGCCAAGGTCCAGGGTGAACTGGCGCAACTGAACAAGACCCCGGGTCGCCAGGTCATGCC GCTGGTTCGCGAAGGTCAGCGCCCCGGCACCATGGACGTTGATTTACAGGTCGAAGACCAGAACCCCTGGACCGCCAGCGTGGGTCTGAACAACGACTAC AGCGCCGACACTGAAAAACTGCGCACCGTCACCAGCCTCGGTTACAACAACCTTTGGCAGCTCGGGCACAGCGTCAACCTGACGTTCTTCACTGCACCGC AAGAGACCGACAACGCCAAGGTCTGGTCCGGTTCCTACACCGCGCCACTCACGGATCGCTGGAGTGTGCAGTTCTCCGGTTACCAGTCCGACAGCAACGT CGCCACCATCGGCGGCAGCAATGTGTTGGGCAAGGGCCATTCCTACGGTGTGGCGGCGATTTACACGCTGCCGTCCAGCGGCAACTGGTCGAATTCGCTG TCGGCCGGCATCGACTTCAAAGACTTCGACGAGCGCCTGACCCTGTCCGGCGAAAGTGACAAGGTTCCGCTGCAGTACGCGCCATTCACCTTCGCCTACA ACGGCTATCGCTACACCGAAAAAAGCCAGCTTGGCCTCGGCCTGAGTCTGGTCGCGGCCACGCGCAGCGTCTTCGGCTACGGCAGCGATGACGAAGACTT CGACTACAAACGCTACCGCGCCAAGCCGAGTTTCGCTGTGCTCAAGGGCGACACCAGTTACACCTGGACCTTCGACAGCGACTGGCAGAGCGCGAGCAAA GCCGCGTTTCAACTCGCCTCGGGGCCACTGATTTCCAACGAGCAATTCTCCGCCGGCGGTGCGACTTCGGTGCGTGGCTATCTGGCCGCCGAACGCACTG CCGATGACGGCTACCTGCTGAGCCAGGAACTGCGCACGCCATCGCTGGCCAGGTTCGCCGGCACGTGGATGCAGGACTGGCGTTTCTACGCCTTCGCCGA AGGCGCGCAACTCTACCTGCGCGACGAACTGCCGGATCAGGACGCCAATTACGCCCTGGCCAGCGTTGGCCTCGGCACCCGCGCCAGCCTGAGCAAATGG CTGTCCGGCAGCCTCGACTGGGGCTATCCGCTACTCGAAGGGCCGAACACCTCGAAACAGGAATCGCGCCTGCACTTCAACCTTCAAGCCACTTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGAGCACGTTCATGCAGCGCCTCATTCTTTCGTTGTTGATCTGCCTGGGCTTCGTGCTCCCGGCCACGGCTCAGGCCTGGTGGCAGGACGACTGGCATT ACCGCAAACAGATCGCCGTCGACACCACGCCGCAAGGTGCGGCAATCAATCAGCCAATTGGCCGCACCGCGCTGCTGGTGCGTCTGCACACCGGCAACTT CACCTTCGACGGGGTGAAAGAGGATGGATCGGACCTGCGCTTTGTCTCGGCCGATGACAAAACCGTGCTCAACCACCAGATCGAAAGCTTCGATGCGCTG ATGGGCATGGCGCTGATCTGGGTCGATGTGCCGAATGTCGAGGGCGGCCAGCGTCAGGACATCTGGATGTACTACGGCAACCAGAAAGCTCCGGCGACCG GCAACGGCCAATTGACGTTTGACCCCAATTACACGGCGCTTTATCACTTCGACGGCGCCACCGGCACCCCGGCCAAAGACACCACCGCTTACGGCAACAC
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| Amino Acid Sequence |
>membrane protein
MEQIFTSRLVLWGWLLVTAGVQPALAEEAGESAAAQRLVDVNEYFVRGNTVLDARAIEEAVYPFLGPQKALADIEGARDALQKAYQERGYQSVFVELPEQ AVADGIVYLQVSETKVGRVRVVGAKHYSPLDIRDDVPALKEGEVPDFAKVQGELAQLNKTPGRQVMPLVREGQRPGTMDVDLQVEDQNPWTASVGLNNDY SADTEKLRTVTSLGYNNLWQLGHSVNLTFFTAPQETDNAKVWSGSYTAPLTDRWSVQFSGYQSDSNVATIGGSNVLGKGHSYGVAAIYTLPSSGNWSNSL SAGIDFKDFDERLTLSGESDKVPLQYAPFTFAYNGYRYTEKSQLGLGLSLVAATRSVFGYGSDDEDFDYKRYRAKPSFAVLKGDTSYTWTFDSDWQSASK AAFQLASGPLISNEQFSAGGATSVRGYLAAERTADDGYLLSQELRTPSLARFAGTWMQDWRFYAFAEGAQLYLRDELPDQDANYALASVGLGTRASLSKW LSGSLDWGYPLLEGPNTSKQESRLHFNLQATF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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