Pseudomonas fluorescens AU11114, AA065_RS13900

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU11114 Contig_39, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GATCAGCGTCAGTCGCAGCGAAGTCTGCCTGCGCCTCGGCGAACGTGAATGCCGCGTTTCGGTGGTCAGTGGTGCGGTGCAGTTGCAGCCGCTGCAAGGG CCGGCGCTGATGTTGAGTCAGGGCCAGCAGGTCAGTCTGCAAGCGTCCGGCGCCGGGCGTGTCGCAGCGTTCGATGCCTTGATGCCGGGCTGGCGTGAAG GTGTATTGATGGCGCAGAACCAACCGCTGGGGGATTTCCTGCGGGAGTTGAGCCGTTATCGTTCCGGGCTGTTGCGCTGGGATCCGGCACTGGAGTCCTT GCGCATCACCGGCAGTTTCCGCCTCGACAACACTGATCAAGTCCTTTCATTACTGGCGGCGAGTCTGCCAATCGACGTCCATACGCGCACCCGTTTCTGG GTTTCTCTCGTCCCGCGGAAAAACTTTAGCTGAAGGCTGTCCCTTTTTTTCGCCTCGCTGGTCATTTCAGGCAAGTGAACAAAATCGAGAGCTTTTTCCA
DNA Sequence for Gene
>AA065_RS13900
ATGCCCGCAGTATTCCCAAGTCGTTTGCGTCCGTTGTTGCAATTGAGTCTGCTGCTGAGCCTGAGTGCCAGCCCCTTGTTGATGTCGACCAGTTGGGCCG ATGGCGCAGAGCGCCGCAGCTATCAGGTACCGGCCGGTAATCTGAGCGCGGCGTTGACGCGTTTTGCCGGTTTGGCCGGGGTCAATCTGTCGGTGGACCC GGCGCTGGTCAGCGGGCGTAACAGCGCAGGGCTGTCTGGTGAATACGGGGTGGAGGAGGGCTTCACGCGCTTGTTGCTGGGCAGTGGTTTGCAGTTGCAG CCAGTGGGCGGCAATGCCTACATCCTGGTTCCGGCGGCGGACGGCAGCAGTCTGGAACTGGCGCCGACCTCGATTCTCGGCGCCACCGGCTCGTCGGATG CCGACGTGTTTGCCGGAGGCCAGGTCGCACGGCGCGGCTCGCAAGGGCTGTTGGGGTCCAAGGACTTCATGGAAACTCCGTTCAGCATGACCACTTACAC CAGCGAAGCGGTCAAGAACCAGCAAGCCCGGACCCTGGGGGATCTGATCGCCACTGATCCTTCGGTGCGCGCGACCAACCCGGCAGGGGGGCGTTACGAG CAATTCACCATCCGCGGCTTCAGTCTGTTCAACAGTGACGTTGCCTATAACGGGCTCTACGGCGTATTGCCAACGTACACGATCGACATGGAAATGGCCG ACCGCGTCGACATCATCAAAGGCCCGAGCCAACTGATTAACGGCATTTCGCCTCGGGGCAGTGTTGGCGGCGGGATCAACGTGGTGCCCAAGCATGCTAC CGACAAGCCAATTACTTCGTTGACGACCAGTTACGCCTCCAACAATCAGCTTGGGGGGGCAGTGGACGTCGGTCGACGTTTCGGCGAGGACAACCAATTC GGCCTGCGCTTCAACGGCGTCAAACAGTCTGGCGACACTGAATGGGATCACCAGCGTATCGATCGCGATATGGCGGTACTTGGCCTGGACTTTCGCGGCG ATCGTCTGCGCCTGTCGACCGACATCGGTCATACCGAGCGCGATACTGACGCCCCGCAAGAACGTGTTCAGGTGGCGGCCAACGCGAAGGTTCCAAACGC CAACGACGTGCGAAACAACTACGCGCAGCCCTGGAGCCAGGCGCGAACCAAGGACACCTTTGGCACGGTCAACGGTGAGTTCGATGTCAGCGATTCGGTG ATGATGTACGGCGGTGTCGGCGCACGTAAAAGCAACCATGACTTCCTGCGCCATGCCGTTTCCGTCACCAACGACGCTGGCGATTTCAGCGTGCAGCCAC GGGATTTCACCCGCGACGAGAACGTTCGTACGGCCACGGCTGGCGTGCGTAACTGGTTCCATACCGGCCCGGTCAGCCATGAGGTCAACCTGGCCGCCAG CTATTTCTACATGGACTTCGTAAACGGCGGCGCCCGCTATGCGGCAGGACGCAGCAACCTTTACGACCCGGTGACAACTGCCAAGCCCGGCACACCGACG CGTCAAGATGCCAAGGTCTATACCGAAAACCGCTTCAGCGGCGTGGCGTTGTCCGACACGCTGGGCTTCTTTGATGATCGCCTGTTGCTGACCCTCGGCG CGCGCTGGCAGCGGGTCAAGGTCGACGACTGGAGCGACGATGTGAAGGGCGACACCGCTTACGACGAGGAAAAGATTTCGCCTTCGGGGGGCATTCTGTT CAAGGCGACCGACAAATTGTCGCTGTACGCCAATTACATGGAAGGCCTGAGTCAGGGCAAGATCGCGCCTTCGACCTCGGTGAACGAGGATGAAATCTTC CCGCCGTTCATCAGCCGCCAGGTCGAGGTCGGCGCCAAATACGACGCCGGCGCTTACGCCTTGACCGCTGCGGTGTTCCGGATCAAACAGCCAGCCTACG AAACCAACGCTACGACGCGGGTGTTCGGCCCGAACGGCAAACGGCAGAACAATGGGGTGGAGCTGAGTATGTTCGGTGAGCCGCTGAAAGGTTTCCGGCT GCTCGGCGGTGTGATGTATATCGACAGCGAATTGACCCACACCACCAACGGCACTTTCGATGGCAACCGTGCGCCGGCCACGCCGAAATACAACGTCAAC CTGGGTGCCGAATGGGACGTGCCGACTGTGCAGGGGTTGACGCTGACCGGGCGCGGAATCTATTCCAGCTCCCAGTATCTGGATCAGTCCAACGAGAAGG AAATCGACTCCTGGGAGCGCTTCGACGTAGGCACGCGTTACGCGTTCAAAGTCGATGACAAAAACATTACCCTGCGTGCCAACATCGAGAACGTGATGGA TAAACGCTATTGGAGTTCGGCGGGCGCTTCGGATGACAGCGAGCCGGGTTTGACGCTGTCGACGCCGCGGACTTATCTGTTGTCAGCGACAGTCGATTTT TGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGGTGAGGTGGGAAGGGCGGCGGTATCATTTTGTTGATAACGTCGCCAAACGTCTTTAAGTGCGGTCGATGTGACGTTAACTGCACTCAGCGTGCACTCA AAGTTGACGGGCGGGCGGTTTAGAACTATTTCAAGGGCAGATCCGCCTCACACGTCGCGAAGAACAAATGCCGCTGGCAATGGTGGAACTCCTTCGCGCA ATGCTTCCCACAAATGCAAGGAGGCGCTGGTGTGATAACGCTTTCGGGAACGAATCAGGTATGCAGAGCGATGCAAGCCGGGTGCAGAAATCGGGCGAGC CCCGTCAAGCATGTTCAAGCTGAGCGCCGCCATGGTGTTCATGACAGCGGTCACATTGTTGTAGCGCGTAGCCTCTGCCAAATCAGACAAAACATCTGAC TCAAGATAAACGCACGGCTTAAGTCGGGCCTTGGCAAAGGCTGCGTCTAGTTGCCGTCGCATCATGTACTCGCTGGGCAGCAACGCTAATTTAACTTGGG
Amino Acid Sequence
>TonB-dependent receptor
MPAVFPSRLRPLLQLSLLLSLSASPLLMSTSWADGAERRSYQVPAGNLSAALTRFAGLAGVNLSVDPALVSGRNSAGLSGEYGVEEGFTRLLLGSGLQLQ PVGGNAYILVPAADGSSLELAPTSILGATGSSDADVFAGGQVARRGSQGLLGSKDFMETPFSMTTYTSEAVKNQQARTLGDLIATDPSVRATNPAGGRYE QFTIRGFSLFNSDVAYNGLYGVLPTYTIDMEMADRVDIIKGPSQLINGISPRGSVGGGINVVPKHATDKPITSLTTSYASNNQLGGAVDVGRRFGEDNQF GLRFNGVKQSGDTEWDHQRIDRDMAVLGLDFRGDRLRLSTDIGHTERDTDAPQERVQVAANAKVPNANDVRNNYAQPWSQARTKDTFGTVNGEFDVSDSV MMYGGVGARKSNHDFLRHAVSVTNDAGDFSVQPRDFTRDENVRTATAGVRNWFHTGPVSHEVNLAASYFYMDFVNGGARYAAGRSNLYDPVTTAKPGTPT RQDAKVYTENRFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWSDDVKGDTAYDEEKISPSGGILFKATDKLSLYANYMEGLSQGKIAPSTSVNEDEIF PPFISRQVEVGAKYDAGAYALTAAVFRIKQPAYETNATTRVFGPNGKRQNNGVELSMFGEPLKGFRLLGGVMYIDSELTHTTNGTFDGNRAPATPKYNVN LGAEWDVPTVQGLTLTGRGIYSSSQYLDQSNEKEIDSWERFDVGTRYAFKVDDKNITLRANIENVMDKRYWSSAGASDDSEPGLTLSTPRTYLLSATVDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site