Pseudomonas fluorescens AU11114, AA065_RS27215

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU11114 Contig_12, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTGTGGCGGGTTTCTCTATGAGAAAGGGGACTGTCCCTGATACTCCTGTGAGACTAGCGGCGGGTATATTAGTGCATTTTTTTGGCTGCGTCATTTATGT CGTTTTTAATTATTATGGTGTTTTGCTGTACAAGGTTTTATATGGTGGATTGACTTCGCGTGGTGCTTCCATCGGGATTGCCATGTATATGGTTTTTTAT CTATTTGTTTTTGTGAATTTAGTTGTTGCTGTGATTCCAAAGCAGATGGTGAAATTTAGCATTGTTGTTCTAACGGTTGCATTGATATTGGTTTATCTGT TGCCGCTTTATCCTGTTCGCGCGGCGTTTTATAGCGTTTTAACGGGTGGGCTGACTACTTTAGCGATATGGCTGGCTAGCAAGTTAAACAAGTTGTTGCT AGCTCGGAGCATGACATGAAGTTTTTCTGTTTGCCCATATTTGCGCTCTCAGTCGCTTTCAGTTTGCAAATCAAACGAATAAATACCCAGGCAGCCATAC
DNA Sequence for Gene
>AA065_RS27215
ATGTCCTTTAACCACTACTACCAAAGCGAACTCACCGCACTGCGCCAACTCGGTCGCCGTTTCGCCGAGCGTAGTCCGGCGTTGGCGCCGTATCTGGGTC AGGCCGGGCGGGATCCGGATGTGGAGCGGTTGCTGGAAGGCTTTGCGTTTCTGACCGGGCGGCTGCGCCAGAAGCTCGATGACGAGTTGCCGGAGCTCAG CCATTCGCTGATGCAGTTGCTGTGGCCGAACTACATGCGCCCGCTGCCGGCGTTCAGCATTTTGCAGTTCGATCCGCTCAAGCGTTCCGGCCCGGCATTG GTGGTCGAGCGCGATACACCGGTGGAAAGCAAACCGGTCGAAGACGTGCGTTGCCGCTTCCGCACTTGCTACCCGACTGAGGTGCTGCCGCTGGATCTAG CCGCGCTGAATTATTCGGTAAAGGGCGACGGTTCGCTGCTCAGCCTGCGTCTGGAAATGAGCGCCGACGGCCACCTCGGCGAATTGGAACTGAGCAAGCT GCGCCTGCACTTTGCCGGTGAGCGCTACATCAGCCAGATGCTGTATCTGAGTCTGCTGCGCAACCTTGAGGGCATCGAGCTGATCCCGCTTGACGGCGCC GGCAAACCGATTGATGGCGTCAGCGGCAAACCGATGGCGTTCAAGATTCCAGGTGACCGGGTCAAACCGGTGGGCTTTGCCGAAGAAGAAGCGTTGATTC CGTATCCGCTGAACACCTTCCGTGGTTATCGCTACCTGCAGGAATACTTCGCCTTTCAGGACAAGTTCCTGTTCGTCGACGTCAACGGTCTGGACATTCT CAAGGCATTGCCGGAAGACACCCTCAAGCAGATGCGCGGCCTGGAGTTGCGTTTCGATATTCGCAAGAGCGGCATCATGCGCATGCGTCCGACGCTGGAC AACGTGAAGCTGTTCTGCACGCCGATCTTCAATCTGTTCGAGCACGACGCGCTACCGATTCGCCTCGACGGCAAGCAGGACGAATACCTGCTGCTGCCGG CGGAATACGATCTGGAAAACTGCGGCGTGTTCTCGGTGGAAACCGTGACGGGATGGAAGCCCGGCGGCCTCGGCTATCAGGAGTACGTGCCGTTCGAATC CTTCGAGCACGACCCGAGTTTCGACGTGCCCAACAGCCGTCCGCATTACAGCATTCGCCAGCGTTCGTCCTTGCTGCACGACGGCCTCGACACTTACCTG AGCTTCGGCATTCGCCACACAGAAGCCCATGAAACCCTGTCGATCGAGCTGATGTGCACCAACCAGAACCTGCCGAAGAAGCTCAAGCTCGGCGACATCT GCATGGCCTGCGAAGAGACGCCGGAGTTCTTGAGCTTCCGCAACATCACCCCGGCCACCTCAAGCTTCGCGCCGCCGCTGAACCGTGACTTCCTGTGGAA GCTGATCAGCAACATGTCGCTTAACTATCTGTCGCTGGCCGACGTCAATGCGTTGAAGGTGATTCTGGAAACCTACGACCTGCCGCGCTACTACGACCAG CACGCGGAGAAAGTCAGCAAGCGCCTGCTCGGCGGCCTCAAACATATCAAGCACCACCACGTCGATCGGCTGCACCGTGGCTTGCCGGTGCGCGGTTTGC GCACCGAACTGACCATCGATCCGGAAGGGTATATCGGCGAAGGCGACCTGTTCGTTTTCGCTTCGGTTCTTAACGAGTTTTTCGCGCTTTACGCCAGTCT CAATTCATTCCATGAGCTGCGGGTAAAAAGCACACAGGGAGAGGTGTACCAATGGACACCACGTATGGGCCTTCAGCCCCTGCTTTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGGGCTGACCCGGGTAATACGCGAGTACTCGCTGTTTCAGGCCGTGCTGCTGGTGATCGACCGGCTGCGCGAGGCACACCCGCACCTGAGCGAAGACGA TTTGTACGATCAGGTCGAGTTTCAGGCCAACCCCAGCCTCGGATTTCCGCGTAGCGATGTCGATCGCGTGGAGTTTTTCGAAGAGCACGGGCAGATGCGC GCGCGCGTGCGTTTCAACCTGATCGGTCTGGTCGGTTCCGGTTCACCGCTGCCGGCGTTCTACGGCGAACAAGCCTTGGGCGACAGCGAAGACGGCAACC CGACGCGCAATTTCCTCGATCTGTTCCACCATCGTCTGCAACGGCTGATGCTGCCGATCTGGCGCAAGTACCGTTACCGCGCGAGTTTCCAGAGCGGGGC GATTGACCCGTTTTCGTCGCAGCTGTTCGCACTGATCGGCCTGGGTGGCGACGAGATCCGCAAGGCCAAGGAACTCAACTGGAAACGCCTGCTGCCGTAC
Amino Acid Sequence
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPYLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSLMQLLWPNYMRPLPAFSILQFDPLKRSGPAL VVERDTPVESKPVEDVRCRFRTCYPTEVLPLDLAALNYSVKGDGSLLSLRLEMSADGHLGELELSKLRLHFAGERYISQMLYLSLLRNLEGIELIPLDGA GKPIDGVSGKPMAFKIPGDRVKPVGFAEEEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDVNGLDILKALPEDTLKQMRGLELRFDIRKSGIMRMRPTLD NVKLFCTPIFNLFEHDALPIRLDGKQDEYLLLPAEYDLENCGVFSVETVTGWKPGGLGYQEYVPFESFEHDPSFDVPNSRPHYSIRQRSSLLHDGLDTYL SFGIRHTEAHETLSIELMCTNQNLPKKLKLGDICMACEETPEFLSFRNITPATSSFAPPLNRDFLWKLISNMSLNYLSLADVNALKVILETYDLPRYYDQ HAEKVSKRLLGGLKHIKHHHVDRLHRGLPVRGLRTELTIDPEGYIGEGDLFVFASVLNEFFALYASLNSFHELRVKSTQGEVYQWTPRMGLQPLL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site