Strain | Pseudomonas fluorescens strain AU11114 Contig_12, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TTGCTGCGTCAGAGCGTCGGCGGTTTGCAGCAGAGCCTGCGTACCCGCTCGGAGCTGAAAAACGAACTGCGTCTGGCCCAGACCACCGTGCAAGGCACCA ACAAGAACCCGCTGAAATTCGCCGTTGATCCGAGCGAAGCGCTGGAAATTCTGTTGCAGCCAAGCAAGCCTGGGCATCTGCCGGCCGAGCAAGCCATCTC CCGCGCGTTCCGCGATTTGCAGGCGCATCAAGTGGCACTGCTGACCGCCAGCCGCGCCGCCGTGCGCGGCACGCTGGAGCACTTCTCGCCCGAGCAACTG ACCTTGCGTTTCGAACGCGACAGCAAGCCGCTGATCGCGACGTCCGGCGGGCGCTGGAGAGCGTTTGGTCGTTATCACCAGGCGCTGCGTCAGGACGATG ACTGGAGCGAGCGTCTGCTGGCCCGCGACTTCGCCCAGGCTTACGAAGAACAGATCCGCCTGATCTCCACCCTCCACACCGACCACCAAGGATGATGCGC
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DNA Sequence for Gene |
>AA065_RS27185
ATGTCTCGCCGTTCGACCGCTTTTTTCAAGACGCTGACTGCGCTCACCGTGCTGGTGCTGCTCGCCGGTTGCTCGTCGCTGTCGCCGTACTCGAAAGTGA CCAAGATCAACCTGAAGCTGACCGGCAGCGATCAGCTCAACCCGGACCTCAACGGTCGCCCGTCGCCGATTGTGGTGCGCCTGTTCGAACTCAAGCACCC GGTGACGTTCGAGAATGCCGATTTCTTCAGCCTTTACGAGCGCGCCAAGGAATCCCTCAACCCGGATCTGGTGGCCAGCGAAGAACTCGAACTGCGCCCG GGTGAAACCGTGGAAATGAAGCTCAAGGTGGAAGAGGGCAGCCTTTATGTTGGCGTTCTCGCCGCTTACCGCGACTTGCCGGAAAGCCAATGGCGCTACA CGGTGCAGATCACTCCGCTGGAAGTCACCGAAGTCGATCTGACTCTGGACCAGACCGGCATCCGCAACACAAATCAAGTGCTCGCCAAGGCGGATGACTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCATGAATACCCATAAAGTCATTTGGCAGGAAGGCATGCTGCTGCGTCCGCAGCACTTCCAGCACAACGATCGCTATTACGATCACCAGATGAAAACCCG CACCCAATTGCTGGGTGGCTACACCTGGGGTTTCCTCAATCTGGAGATCGACTTGCAGTTCCTCAACATGGGCAAACTGGTGATCAGTGAAGCCTCGGGG ATTTTGCCGGACGGCAGCCTGTTCGAACTCGGCGGCAACACCGAACCGCTGGCGCTGGATGTGCCGCCGAACACCGGCAACACGCCGATCTATCTGGCGC TGCCGCTGGTCACGGGTAACCACATCGAGTCGCGCCGTCCGGAGCAATCTGATGTGCTGGCGCGTTACACCGCGTATGACGCCGAAGTGGCCGACTCCAA CGCCGGCGACGATTCCGCCAGCCAGGTCAGCTGTGGTCGCCCGGACTTCAAACTGTTGCTCGGCGAGCAGCAGAGCGATCAGGCCTACGTGAAGCTGAAG
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Amino Acid Sequence |
>type VI secretion protein
MSRRSTAFFKTLTALTVLVLLAGCSSLSPYSKVTKINLKLTGSDQLNPDLNGRPSPIVVRLFELKHPVTFENADFFSLYERAKESLNPDLVASEELELRP GETVEMKLKVEEGSLYVGVLAAYRDLPESQWRYTVQITPLEVTEVDLTLDQTGIRNTNQVLAKADD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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