Pseudomonas fluorescens AU5633, AA066_RS08435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU5633 Contig_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCGTCGAAGAAGATCTGCGACAGCTTCGGATCCTGGGTGCCCAGCGCCATCATCAAGCGATGCAGATTCACCGACTCGTCGCTGTTGATCAGCTGATG AAAGCCCCGGGCAATGTTCAGCAACACATTTTCCACGGGGATGCCGGCGGGCAATTCGAAGAACAACGGCGGTAACTGTTCCTCGCATTTGGCCATTACC GCGGAGGAGAACAGCGTCTCCTTGTCGTTGAAGTGGCTGTAAACCGTCAGTTTCGACACGCCCGCCTCGGCGGCTACCGCGTCCATGCTGGTGTTGGCGT AGCCGTGACTCAGAAACAGGGTTTTCGCCGCATCGAGGATTGCCCGGCGCTTGGCCGGATCCTTCGGACGGCCCGGGCCGTTTGGAGCTGAAAGATTGTT CGACATTCTTCGCTTTTAATACTGGACTGGTGAGTTTGCTATTAATACCATACCGGCCAGTATAAATATTCCAAGCACCATAAGCGAAAGGTCCGTCACC
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| DNA Sequence for Gene |
>AA066_RS08435
ATGTTCCGCTATGCGTTGTCCTTTGCCGTGCCAGTCAGTCTGGCTGTTTTATTGTCCGCATGCGGTCAGGAAGAGGCGACGTCAGTCAGCGTTCGACCGG CCATGGTGGTGCAGCCAGAGCCTTCGGCGCAGGCGATGGAAAGTTATCCGGGTGAGGTTCGCGCCCGCTACGAACCCGATCTGGCGTTCCGCATTGGCGG CAAAGTCAGCCGACGACTGGTCGAGGAAGGCCAGCGCGTGAAGGCTGATCAACCATTGGCCGAGCTCGATCCGCAGGACGTACGCCTGCAACTGGAAGCC ACTCGCGCCCAGGTCGCCGCCGCTGAAGCCAATCTGAACCTGGTGCGCGCTGAGCGTGACCGCTACAAAACCTTGATGGAACGGCAGATGGTCAGCCGTT CTGCCTACGACAACGCGGAAAACCTCTACCGCTCCGGCGAAGCCCGCCTCAAGCAAATCAAAGCCGAATTCAACGTCTCGACCAACCAGGCCAGTTACGC CGTGCTGCGCGCGCCGCAGGACGGCGTGGTGGCCAAGCGTTCGGTGGAAGTCGGGCAGGTGGTCGCCGCCGGACAAACCGTGTTTACCCTCGCCACCGAC GGCGAGCGGGAAGTGTCGATCAGCCTGCCGGAGCAGAGCTTCGGGCGGTTCAAGGTCGGCCAGCCAGTGACCGTTGAACTGTGGACCCAGCAGAACCAGC GCTTCGCCGGGCAGATTCGTGAGCTGTCGCCGGCGGCCGATCCGAAATCCCGTACCTTCGCCGCGCGCATCTCGTTCACCAGCGGCAAAGTCCCGGCTGA ACTCGGGCAGAGCGCTCGGGTGTTCGTGCAATCGGCAGACAGTGTGCCGCTGTCAGTACCGCTTTCGGCCCTGACTGCCGAGAACGGTGCGACCTATGTC TGGGTCGTCAGCGCCAACAACACCCTGAAGAAGACGCCAGTGCGCATCGGCCCGTTCGGCGAGAAAAGTGTGCCGGTGCTCGAAGGCTTGAATGCCAGCG ACTGGGTAGTCGCCGCCGGGGTTCACGTATTGCTCGACGGTCAGCAGGTGCGGCCTGTGGATCGCTCCAACCGTGTGGTCAATCTGGCGGACAAGGAGTA A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCCCGATGCGCTTCAACCTTTCCGAATGGGCGTTGCGTAATCGCCAGATCGTCTTGTTCCTGATGCTTTTGCTGGCCATCGTCGGGGCCTTGTCCTACA CCAAACTCGGCCAGAGCGAAGACCCGCCGTTCACCTTCAAGGCCATGGTCATCCAGACCCGCTGGCCGGGGGCGACCGCACAGGAAGTTTCACGGCAGGT CACCGAACGCATCGAAAAGAAATTGATGGAAACCGGCGAGTACGAACGCATCGTGTCGTTCTCTCGCCCCGGCGAGTCGCAGGTCACCTTCATTGCCCGC GACTCGATGCACTCCAAGGAAATTCCGGACCTCTGGTATCAGGTGCGCAAGAAGGTCAGCGACATTCGCCAGACCTTGCCGCCGGGGATTCAGGGACCGT TTTTCAACGATGAATTCGGCACCACGTTCGGCAATATTTACGCGCTGACCGGCGACGGTTTCGATTACGCAGTGCTCAAGGATTACGCCGACCGCATCCA
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| Amino Acid Sequence |
>RND transporter
MFRYALSFAVPVSLAVLLSACGQEEATSVSVRPAMVVQPEPSAQAMESYPGEVRARYEPDLAFRIGGKVSRRLVEEGQRVKADQPLAELDPQDVRLQLEA TRAQVAAAEANLNLVRAERDRYKTLMERQMVSRSAYDNAENLYRSGEARLKQIKAEFNVSTNQASYAVLRAPQDGVVAKRSVEVGQVVAAGQTVFTLATD GEREVSISLPEQSFGRFKVGQPVTVELWTQQNQRFAGQIRELSPAADPKSRTFAARISFTSGKVPAELGQSARVFVQSADSVPLSVPLSALTAENGATYV WVVSANNTLKKTPVRIGPFGEKSVPVLEGLNASDWVVAAGVHVLLDGQQVRPVDRSNRVVNLADKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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