Strain | Pseudomonas fluorescens strain AU5633 Contig_58, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATCTGGTACTTCCTGGTGCCCGACCTGCTGCCGCAGAACCTGCAGGACTGGTACAAACAGGATCTGAACCCCACCACCTCGGCCTACCTGAGCGTCGTCG TGTGCCTGGGCCTGTTCACCGCCGCCCGGGTCTGCGAGCAAGTGCGCACCGGTATCCAGGCGCTGCCGCGGGGCCAGGAATCCGCCGCCCGCGCCATGGG TTTCAAGCTGCCGCAGATCTACTGGAACGTGCTGCTGCCCCAGGCCTACCGCATCATCATTCCGCCGCTGACCTCGGAATTCCTCAACGTCTTCAAGAAC TCCTCCGTGGCGTCCCTGATCGGCCTGATGGAACTGCTGGCGCAAACCAAACAGACCGCCGAATTCTCGGCCAACCTGTTTGAAGCGTTCACCCTGGCCA CGCTGATCTACTTCACCCTGAACATGAGCCTGATGCTGCTGATGCGCATGGTCGAGAAGAAAGTCGCGGTGCCCGGCCTGATCTCCGTGGGGGGTAAATA
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DNA Sequence for Gene |
>AA066_RS19895
ATGGACTTCGATTTCAGCGGCATCATCCCCGCGATCCCGGGCCTGTGGAACGGCATGCTCATGACCTTGAAGCTCATGCTCATGGGCGTGGTCGGCGGCA TCGTGCTCGGTACGATCCTCGCGCTGATGCGCCTGTCGTCCAGCAAACTGCTGTCTCGCGTGGCCGGCGCCTATGTGAACTATTTCCGCTCGATCCCGCT GCTGCTGGTGATCACCTGGTTCTACCTGGCGGTACCGTTCGTGCTGCGCTGGATCACCGGCGAAGACACCCCGATCGGCGCGTTCACGTCCTGCGTCGTG GCCTTCATGATGTTCGAAGCCGCGTACTTCTGTGAAATCGTCCGTGCCGGCGTGCAGTCGATCCCCAAAGGCCAGATGGCCGCTGCACAAGCGATGGGCA TGACCTATGGCCAGACCATGCGTCTGATCATCCTGCCCCAGGCGTTCCGCAAGATGACCCCGTTGCTGCTGCAGCAGTCGATCATCCTGTTCCAGGACAC CTCGCTGGTCTACACCGTGGGCCTGGTGGACTTCCTCAACTCCGCCCGCTCCAGCGGCGACATCATCGGTCGTTCCAACGAGTTCCTGATCTTTGCCGGT GTCGTTTACTTCATCATCAGCTTTTCCGCCTCGCTGCTGGTCAAGCGTCTGCAAAAAAGGTTTGCCGTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCTCCATCAAGAACATCAACAAGTGGTATGGCGACTTCCAGGTGCTGACTGATTGCAGCACCGAGGTCAAGAAAGGCGAAGTGATCGTGGTCTGCGGCCC GTCGGGCTCGGGCAAGTCGACCCTGATCAAATGCGTCAACGCGCTGGAGCCGTTCCAGAAAGGCGACATCGTCGTCGATGGCACCTCGATTGCCGACCCG AAGACCAACCTGCCGAAACTGCGCTCGCGCGTCGGCATGGTGTTCCAGCATTTCGAGCTGTTCCCGCACCTGACCATTACCGAAAACCTGACCATTGCGC AGATCAAGGTATTGGGCCGCAGCAAAGAAGAAGCGACCAAAAAAGGTCTGCAACTGCTGGAACGCGTTGGCCTGTCGGCGCATGCCCACAAGCACCCGGG GCAACTGTCCGGCGGTCAGCAGCAGCGTGTGGCGATTGCCCGCGCGCTGGCGATGGACCCGATCGTCATGCTGTTCGACGAACCGACCTCGGCGCTCGAT
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Amino Acid Sequence |
>amino acid ABC transporter permease
MDFDFSGIIPAIPGLWNGMLMTLKLMLMGVVGGIVLGTILALMRLSSSKLLSRVAGAYVNYFRSIPLLLVITWFYLAVPFVLRWITGEDTPIGAFTSCVV AFMMFEAAYFCEIVRAGVQSIPKGQMAAAQAMGMTYGQTMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLNSARSSGDIIGRSNEFLIFAG VVYFIISFSASLLVKRLQKRFAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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