Pseudomonas fluorescens AU5633, AA066_RS14565
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU5633 Contig_51, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGCCGCTCAATACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCCATCACCGGGGTGATTGTCTCCGGCG GCGACAACAACATCTTTACCCAGATCGGTTTGATCGTATTGGTGGGCCTGGCCTGTAAGAACGCGATTCTGATCGTCGAATTCGCCAAGGACAAACAGCT GGAAGGCCTCGACCCGCTGGCTGCGGTACTGGAAGCCTGCCGTCTGCGTCTGCGGCCGATCCTGATGACTTCGTTCGCGTTCATCATGGGTGTGGTGCCA CTGGTGTTCTCCAGCGGTGCCGGTGCCGAGATGCGTCACGCCATGGGTGTGGCCGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGTCTGTTGCTGA CGCCAGTGTTCTACGTGTTGATCCGTAACTTTGTCGAACGCGGGGAAGCCCGCAAAGCGGCCAGAGCGCACGCTCTTCAAAAGCCACTGGAGGCGCAATA
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| DNA Sequence for Gene |
>AA066_RS14565
ATGAGTCTGAAAGTCTTCCTGCCGAGTCTTCTGGTGCTGGCGCTGAGCGCCTGTGCCGTCGGCCCCGACTACAAGACCCCAGCCACGGAGGCGGCCAATA TCACGGCCGCCACCGATGGCGCCGCCGGGCAAAAGAACTTTGACCGTTCGAAATTCGAAGGCATCTGGTGGCAGCAATTCGACGATCCGACCCTCAACCA GTTGGTGACGCAATCGCTGCAAGGCAACCGTCAACTGCGCGTGGCGTTCGCCCGCTGGAAAGCCGCCCGGGCGATCCGCGACGACGTCAGCAACGATGCG ATGCCGACCATCACCAGCCGCGCCAGCAGTGATCTGGCCAAGGGACAAATTCCCGGCCAGACCACCAAGCGGGTCAACAGCGAGCGCTACGATCTGGGCC TGGACATGGCTTGGGAGCTTGATCTGTTCGGCCGGATCCAGCGCAATCTGGAAGCCAGCGACGCCGACCAGCAGGCGGCCGAAGCCGATCTGTATCAACT GCAAGTCACGATGATTGCCGAACTGGTCGACGCCTACGGTCAACTGCGCGGTGCGCAACTGCGCGAGAAAATCGCCGTGGCCAACCTGGAAAACCAGCAG GAGTCGCGCAAGATCACCATCAGCCTGCGTGACGCCGGCGTCGGTGATCAGCTCGACGTCGAACGTGCCGATGCGCGTCTGGCCTCGGTCGAAGCCAGCG TGCCGCAACTGCAGGCGGAACAGGTTCGGCAGAAAAACCGCATCGCCACCCTTTTGGGTGAGCGTCCGGACAAAATGACCGTGGACTTGAGCCCGAAAGA CTTGCCGGCAATTGCCAAGGCTTTGCCGATCGGCGATCCGGGTGAGCTGCTGCAACGCCGTCCGGACATCCTCAGCGCCGAACGCAAACTGGCCTCGGCC ACCGCGCGGATCGGCGTAGCGAAAGCCGACCTGTTTCCACGGGTCAGCCTCAGCGGGTTCCTGGGCTGGACGGCCGGGCGTGGTTCGCAGATCGGCTCCT CGGCGGCCAACGCCTGGGCACTCGGCCCGAGCATTACTTGGGCGGCGTTCGATCTGGGTAGCGTGCGCGCCCGCTTGCGTGGCGCCGATGCCGATGCCGA AGGCGCACTCGCCACCTACGAGCAGCAAGTGTTGCTGGCGCTGGAAGAATCGGAAAACGCCTTCAGCGATTACGGCAAGCGTCAGCAACGGTTGATCTCG CTGATTCGTCAGAGTGAATCGAGCCGCAAGGCTGCCGACCTGGCTGAAATCCGCTACCGCGAAGGCACCACCGACTTCCTCGTGCTGCTCGACGCCCAGC GTGAACGGCTGAACGCCGAAGACAGTCAGGCCCAGGCCGAGGTTGATCTGTATCGCGGCATCGTGGCGATTTACAAGGCGCTGGGTGGTGGCTGGCAGCC AGAAACCGTCGCCAGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGTTTTCAAAGCGCTCCTTTGGTTGGCCGCAACCAACCAATTTTTTGCCCCGCGTATCATTCGGTCGCGGGGCTTTTTTGTGCCCGCCCCTGTAGGAGC TGCCGCAGGCTGCGATCTTTTGATCTTGAACATCAAAGTCAAAAGATCGCAGCCTGCGGCAGCTCCTACAGGTCAATTCGCAAGCACGGGTTTGACTCAT GGCCTTCTCTGACCGAAGCTTGCCCCTCTGCTAAAGAACACCCGTTCACGGAAATCGCATGCCTCAGTCCCGCCGCTACCTGCTCATCAGCCTTGGCCTC GTGCTGATCATCGTCGTTGCCTGGTTATCTCTGCGCTCCACCGCCCCGGTAGTGCCCGAGGCGATCAAGCGCGGCTACAGCGAAGCCCTGACGGCGGCCC GCTCCGGGCAGCCCGGGGCGGCACGGCAGTTGTACCAGCAATTGGGGCGCCCGGACTTGTCGGCCAAGCGCAGCGTCTGGCTGCTGGCCGAACTGCCCAA
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| Amino Acid Sequence |
>RND transporter
MSLKVFLPSLLVLALSACAVGPDYKTPATEAANITAATDGAAGQKNFDRSKFEGIWWQQFDDPTLNQLVTQSLQGNRQLRVAFARWKAARAIRDDVSNDA MPTITSRASSDLAKGQIPGQTTKRVNSERYDLGLDMAWELDLFGRIQRNLEASDADQQAAEADLYQLQVTMIAELVDAYGQLRGAQLREKIAVANLENQQ ESRKITISLRDAGVGDQLDVERADARLASVEASVPQLQAEQVRQKNRIATLLGERPDKMTVDLSPKDLPAIAKALPIGDPGELLQRRPDILSAERKLASA TARIGVAKADLFPRVSLSGFLGWTAGRGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGADADAEGALATYEQQVLLALEESENAFSDYGKRQQRLIS LIRQSESSRKAADLAEIRYREGTTDFLVLLDAQRERLNAEDSQAQAEVDLYRGIVAIYKALGGGWQPETVASK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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