Strain | Pseudomonas fluorescens strain AU5633 Contig_51, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGGTAATCGATGCGCGGAATGACCGCCGTGGATTCGATATCGACATTCGGCACCTTGCCGCCCAACGAGCTGATGTTGAGCTTGGTCGACTTGTAATGGT TGTAGTAAAGGTTGAACGCGACCATGTTCTCCGGAAGGCTGTCGACTTCCAGCGGCAGCATGAAGAACCCGTCGGTGCCGGGGCCGATGTTGTCGACGCC GGCTTCGGTGGCCAGGGCCGACAGGGACGCGGTGCAACCGAGCAAAGTCAGTGCCAGACGCAAGGGAAAAGTGGCGCGGTTCGGGCTCATGGCTGTCCTC ATTATTATTGTGGTGGGACGTGGCGCCGGTACGCGAAACGTCCGGCACCATAGAAATAAGCGCTAGAGGCCCGACGGGGCAGGGTATTGGCGGACAGTTA GGGGGACTTCTGCGGACAGTCGGCCAACCCTGTGCTAACTTCCTTCGACATAACCGGTAACAAAAATAACAATCAAGCGTGATCCGGAATGTCAGCCCCC
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DNA Sequence for Gene |
>AA066_RS12410
ATGAACGTAAAAGTCCAAGACCCCACTTTTGAATTGGCGCTGGTCTCGCCATTCCTCCTGCAAACCCTCGCCGAAGTCGTGCACAACAAAGGCATCGACC CCCAAAGCCTGTGCCGGGGCCTGGGCTTCACCCTCGATGATCTGCAGGATCCGGCGCAACGGATTTCCTATCGCCAGGCTGTGGCAATGATTCAGCGCGC GCTCAAAGTGTTGCCCAATCAGGGTTTGGGGTTGTGTGTCGGCGCGCAGAATGTGCTGGGTACGCTGGGGCTGCTCGGGCACGTGCTGTCGCTGTGCAAG ACCTTGCGCGATGCCTTTGCCCTCGGCATCCGCCATCAGCACACCTCCGGCGGAATCGTGGTGTCCAGCGTCGATGTGGTGGGTGATCAGGTGCACCTCG ACGCCGAGTGCCGCTTGCCGTTCGCCGACGTTCAGGTGTTTGCCGTCGAAGAGTTTTTCGCCAGCCTGCTGGTGTATGGCCGGGCCTTGGCCGGCAGTGA ATTCAAGCCGATTGCCGTGGAGTTTGTGCACGCCGCGCCGGATTACCTGAGCGAATACCACCGCTTGCTCGGGCCCGATGTGCGTTTCGGTTGTCTGCAC AATCGCATGCTGATCGATGTTCAGTGGCTGGACGTCAACTTGCCCAATCATCATTCGCTGGCGCTGCGCCAGGCGGTTGCCTTGCTGGAGCTGGAAGCGG CGCAGGTGCACCAGAAACTCGATTTGATTCAGGCGGTGGAACGGGCGATTGCCCGGGATCTGAGCCGGGGCAGCCATATCGAAAAAATCGCCGGCGACCT GAACATGAGCAGCCGCACTTTGCGCCGGCGCCTCACCGAGCACGCACTGACCTTCGAAGCGCTGCTGGAACAGGTGCGGCAGGCGCGGACCCTGAGTCTG CTGGCCAATCCGGACATGCCGATTGAACGCATCACCGAAGAAGTCGGCTACAGCGACGTGCGCAGTTTTCGCCGGGCGTTCAAGCGCTGGACCGGGATGA GCCCGAGTGCGTGGCGCCAGGAGAGCATCGTAACTCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AGATCAAAAGATCGCAGCCTTCGGCAGCTCCTACAGGGATCGGTGTAGGAGCTGCCGAAGGCTGCGATCTTTTGACTTTCAGAGCCCCCACAAAATCTCC GGCTACAGGTAAACTCCCGCGCACTTTCCCAAGGAGTTCACATGAGTTACTACCAGCCGGGCATTCTCGCCACCCCCGTTCCTGCACAAGCGCGTCACCT GTTTTTCGCCCTGGCGTCGGTTGAAGCACTGCCGCAGGCGATCGACAACCTGCTGAGCCTGGTGGACGGCAAGTCGGCGGTGGTCGGTTTCGGTGAATCC CTGACCAAGGCGCTGAACGTACAGATTGATGGACTGCGCAGCTTCCCGGCCATGACCGGCGTCGGCGTGGAAAACCCCTCTACCCAGCACGCGCTGTGGG TCTGGCTGCACGGTGACGACCGTGGCGAACTGCTCAACCGCTGCAACGCCGTCGAGGCCGCACTGGCCCCGGCGCTGCGCCTGGTCGACAGGCAGGAAGC
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Amino Acid Sequence |
>AraC family transcriptional regulator
MNVKVQDPTFELALVSPFLLQTLAEVVHNKGIDPQSLCRGLGFTLDDLQDPAQRISYRQAVAMIQRALKVLPNQGLGLCVGAQNVLGTLGLLGHVLSLCK TLRDAFALGIRHQHTSGGIVVSSVDVVGDQVHLDAECRLPFADVQVFAVEEFFASLLVYGRALAGSEFKPIAVEFVHAAPDYLSEYHRLLGPDVRFGCLH NRMLIDVQWLDVNLPNHHSLALRQAVALLELEAAQVHQKLDLIQAVERAIARDLSRGSHIEKIAGDLNMSSRTLRRRLTEHALTFEALLEQVRQARTLSL LANPDMPIERITEEVGYSDVRSFRRAFKRWTGMSPSAWRQESIVTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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