Pseudomonas fluorescens AU5633, AA066_RS25225

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU5633 Contig_50, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATGTGCACCAACCAGAACCTGCCGCGCAAGCTCAAGCTTGGCGACATCTGCATGGCTTGCGAAGAGACCCCGGAGTTCCTCAGTTTCCGCAACATCACCC CGGCCACGTCGAGCTTTGCGCCGCCGCTGAACCGTGACTTCCTGTGGAAGCTGATCAGCAACATGTCGCTCAACTATCTGTCGCTGGCCGACGTCAACGC GTTGAAGGTGATTCTCGAAACCTACGACCTGCCGCGCTACTACGACCAGCACGCGGAGAAGGTCAGCAAACGCCTGCTCGGCGGCCTCAAGCACATCAAG CACCACCACGTCGACCGGCTGCACCGTGGCTTGCCGGTGCGCGGTCTGCGCACCGAACTGACCATCGACCCGGAAGGGTATATCGGCGAAGGCGACCTGT TCGTTTTCGCCTCGGTTCTTAACGAGTTTTTCGCGCTTTACGCCAGTCTCAATTCGTACCACGAGCTGCGGGTAAAAAGCACACAGGGAGAGGTGTACCA
DNA Sequence for Gene
>AA066_RS25225
ATGGACACCACGTATGGGCCTGCAGCCCCTGCTTTAAGCGGGCTGACCAAGGTAATACGCGAGTACTCGCTGTTTCAGGCCGTGCTGCTGGTGATCGACC GGCTGCGCGAAGCACACCCGTACCTGAGCGAAGACGATCTGTACGACCAGGTGGAGTTTCAGGCCAACCCGAGCCTGGGCTTTCCGCGCAGCGACGTCGA TCGCGTGGAGTTTTTCGAAGAGCACGGGCAGATGCGCGCACGCATGCGTTTCAACCTGATCGGGCTGGTCGGCTCGGGTTCGCCGCTGCCGGCGTTCTAC GGCGAGCAAGCGCTGGGCGACAGCGAGGACGGCAACCCGACGCGCAATTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGC GCAAGTACCGCTATCGCGCCAGCTTCCAGAGCGGTGCGATCGACCCGTTCTCGTCGCAGCTGTTTGCGCTGATCGGTCTGGGTGGCGACGAGATCCGCAA GGCCAAGGAACTGAACTGGAAGCGCCTGTTGCCGTACCTCGGCTTGCTCAGCTTGCGCGCGCACTCCGCGGCGCTGATCGAAGCGGTGTTGCGTTACTAC TTCAAGCACGAAGACCTGGTCATCGAGCAGTGCATCGAGCGCCGCGTGGAAATTCTCGACGAGCAGCGCAACCGCCTCGGCCGCGCCAACAGCCTGCTCG GTGAAGACCTGGTGCTGGGCGAGCGGGTGCGCGACCGCAGCGGCAAATTCCGCATTCACATCACCGAACTCGACTGGGAGCGATTCCACGAATTCCTGCC GATCGGTTTCGGTTACCAGCCGCTGTGCGCGCTGGTGCGGTTCACCTTGCGTGACCCGCTCGATTACGACATTCGCCTGGTGTTGCGCCCGGAAGAAATC CGCGAACTGCGCATTGGTGAGAAGAACGACTGTCGCCTGGGATGGACCAGTTGGCTGGGCTGCGAAAAAGCAGACGGCGTGGTCACCCTGGGCAGCAAAA TTCATTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGACGTGAGCCATGATCAACGTAGACCTGCAACAACTCATCCAGGCGCTGGACGCCGAAACCCGTCGTGATCTGGAGCGTTCGGCCGAACGTTGCGTGGC CCGTGGCGGCAGCAAGATCCTCGTCGAAGACCTGCTGCTGGGTTTGCTGGAACGTCCGAACGGCTTGCTGTCGCGCGCCTTGCAGGATGCGGATGTCGAT GCCGGTGAACTGAGCGCTGCGCTGCAATCTCGCGTTGAACACAGCGCCTCGCGCAACCCGGTGTTCGCCCCGGAACTGGTGCAGTGGCTGCAAGACGCGC TGCTGGTGGCCAACCTCGAACTGGGCCAGACCTCGGTGGAAGACGCCGCGCTGATCCTCGCGCTGCTGCGTAACCCGATGCGCTACGCCGGCAGCCGTTA CCAGCCGTTGCTCGCCAAACTTAACATCGATCGCCTGAAGGAATTTGCCCTGTCGCAACAGGAGCAACCGGCCGCCAGCGGCAAGCCGGCGGCGCAGGGC
Amino Acid Sequence
>type VI secretion protein
MDTTYGPAAPALSGLTKVIREYSLFQAVLLVIDRLREAHPYLSEDDLYDQVEFQANPSLGFPRSDVDRVEFFEEHGQMRARMRFNLIGLVGSGSPLPAFY GEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWRKYRYRASFQSGAIDPFSSQLFALIGLGGDEIRKAKELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHEDLVIEQCIERRVEILDEQRNRLGRANSLLGEDLVLGERVRDRSGKFRIHITELDWERFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRPEEI RELRIGEKNDCRLGWTSWLGCEKADGVVTLGSKIH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site