Pseudomonas fluorescens AU5633, AA066_RS23795
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU5633 Contig_41, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCTGCGCCTGCCGCTGTATCCGCTGAAGGGTTACAGCCTGACCTTGTCGATCGGCGATGAGCATCGGGCGCCGGACGTGAGCATCACCGACTACGACC GCAAGATCGTCTACGCGCGCATCGGCGAACAGTTACGGGTGGCGGCGATGGTCGACATCGTCGGTTTCGACCCGGCGGTAGATCCCGAGCGGTTGGCACT GATCAAGCGCCAGGCCCGCGACACCTTTCCCGATGCCGGCAATTACGACGCGGCTGTGGAATGGGCGGGCATGCGCCCGGCCACCCCCACCGGCGTACCG CTGCTGGGCGCCACGGCGTATCGCAATCTGTGGCTCAACCTCGGCCACGGCGCGCTCGGTTTCACCCTGGCCTGCGGCAGCGGGCAGTTGCTCAGTGAAC TGATCGGTCAGCAGCGTACATCCATTGACCTGCACGGGTTCAATCCCCGTGCGGCGTGACAGTTTCTGCTAAAACACCCCAACCACAACGGAGAATAACA
|
|
| DNA Sequence for Gene |
>AA066_RS23795
ATGCAAAAAATCACGTTGCTCGGCTGCACACTGGCGCTGTTCATCGGCGCCCAGGCACAGGCCAATGAAGTGCCGCTGACCGGCGCGCTTGGCAAGATCG CCAGCGCCAACAGCATCACCCTGGGCTATCGCGACGCCTCGGTGCCGTTCTCGTATGTGGGCGATCACACCGGGCAGCCGATGGGGTATTCGGTGGAGCT GGCGGGCAAGATTGTCGAGCGGATCAAGCAGCAACTGGCGTTGCCGGAGCTGAAGGTGAAGTACAACCTGGTGACGTCGCAGACGCGGATTCCGCTGGTG CAGAACGGCACGGTTGATCTTGAGTGCGGCTCCACCGGGGTGACGGCCGAGCGGCAGAAACAGGTGGCGTTCTCCTACGGTTTCATCTACGTCAAAGGGC AGTTGCTGACCGCAAAGGACAGCGGCATTCACAGCTTCGATGACCTGCGCGGCAAGAACGTGGTGACCACCGCCGGCACCACCAACGAGCGCTATCTGAA GAGCTACAACCTCGACCACAAACTGAACATGTTCGTGATCAGCGCCAAGGATCACGGCGAGGCGTTCCAGATGCTGCAGTCGGGACGGGCAGCGGCCTTC TACATGGACGACGCATTGCTCTACGGCGAGCGGGCCAAGGCGCGGGACCCGCACAACTGGGTCGTGGTGGGGGAGGAACAATCGCGGGAAATCTACAGCT GCATGGTGCGCAAGGATGATCCGCCATTCCTCGCGCTGGTGAACGGCGCGCTGGCCGATTTGTACAGCTCGGGGGAGATCAACGGGATCTACCGTAAGTG GTTCGAACAGCCGATCCCGCCGAAAGGCTTGAACCTTGAGTTCCCGATGACCAGCGAACTCAAGGCAATCATCGCCAAACCGATCAGTGATCCGGTGCAG TGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGGTTAGAAATCACCCCAAAGCTGCTGAGCCACCGCCAGTGCAACCACCGGCGCAGTCTCGGTACGCAGCACGCGTGGGCCGAGGCGGGCGGCGTGGAA ACCGTTGGCCTTGGCTTGCTCGACTTCGGCGTCGGACAAGCCGCCTTCGGGGCCGATCAGGAACGCCAGGGTCGCAGGCTTGGCGTGGCTGACCAACGGC TCGGCCACCGGGTGCAGAACCAGTTTCAGCTCGGCTTCGGTCTGTTTCAGCCAGTCCGCCAGCAGTACCGGTGGATGTATCACCGGCACCCGCGAACGAC CGCATTGCTCGCAAGCGCTGATCGCCACCTGACGCCAGTGCAGCAGGCGTTTGTCGGCGCGCTCGTCCTTCAGGCGCACTTCGCAGCGCTCGCTGAAGAT CGGGGTGATTTCGCTCACTCCCAGTTCGGTGGCTTTCTGGATCGCCCAGTCCATGCGCTCGCCCCGGGACAGGCCCTGGCCTAGATGGATGTGCAGCGGC
|
|
| Amino Acid Sequence |
>ABC transporter
MQKITLLGCTLALFIGAQAQANEVPLTGALGKIASANSITLGYRDASVPFSYVGDHTGQPMGYSVELAGKIVERIKQQLALPELKVKYNLVTSQTRIPLV QNGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTAKDSGIHSFDDLRGKNVVTTAGTTNERYLKSYNLDHKLNMFVISAKDHGEAFQMLQSGRAAAF YMDDALLYGERAKARDPHNWVVVGEEQSREIYSCMVRKDDPPFLALVNGALADLYSSGEINGIYRKWFEQPIPPKGLNLEFPMTSELKAIIAKPISDPVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|