Pseudomonas fluorescens AU5633, AA066_RS04630
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU5633 Contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCGCACCACCAGCGCCTCGCCGTCCGGGTACTGCGCGACGGTTTCGTCGAACTTCTGCCCGATGGTCATCGCCAGCAAGGCTTTGCTCTGGGAACCAC GGGTGTAGCTGCGCTGCGGGTTTGCACTGGGTTGATCCATGACGACCCCTATTGTCTTTATTAGTGGGTTTACTGGAGCTCACTTTTTTGCGGGTGGCCT TTGTGGCGAGGGGATTTATCCCCGACGGTGTGCGAAGCGCACCCTCAGCTTTTCCTGTCGAACCGCATTCACAGGTTTTGGGTCGGCTTCGCCAACCATC GGGGATAAGTCCCCTCGCCACACAAGCTCTCGCCCATAAAAAAGCAGTCCGCTTTCATTCCTGAGGTGCCCCTACTCTCGCTCAAGTTGACGTTAACGTA AAGGGTGATTGACAGCCAATCAGCGCAGGCTTACGTTAACGTAAAGGTGAGAGCCGTTCGACTGCCCTCCCCACCCTACAAAAAAGCCAAAAGGTGACCC
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| DNA Sequence for Gene |
>AA066_RS04630
ATGAGCTACCCATCCCTGAACTTCGCCCTCGGTGAAACCATCGACATGCTGCGCGATCAGGTTCAGTCCTTCGTCGCCGATCAGATCGCGCCACGTGCCG CGCAGATCGACCACGACAACCTGTTCCCGGCCGACCTGTGGCGCAAGTTCGGCGACATGGGCCTGCTGGGTATCACCGTACCGGAAGAGTACGGCGGTGC GGGCCTGGGCTATCTGGCGCACGTGGTGGCAATGGAAGAAATCAGCCGCGGTTCGGCCTCAGTGGCACTGTCCTACGGCGCGCATTCCAACCTTTGCGTC AACCAGATCAACCGCAACGGCAACCACGAACAAAAAAGCAAATACCTGCCCAAGCTGATCAGCGGCGAACATGTCGGCGCCCTCGCCATGAGCGAGCCGA ACGCCGGTTCCGACGTGGTCTCGATGAAACTGCGCGCCGATAAACGCGGCGACCGCTTCGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGCCCCGA CGCCAACACCTACGTGATCTACGCCAAGACCGACCTGGAAAAAGGCCCGCACGGCATCACTGCGTTCATCGTCGAACGCGACTGGAAAGGCTTCAGCCGC AGCAACAAGTTCGACAAGCTCGGCATGCGCGGCTCCAACACTTGCGAGCTGTTTTTCGATGACGTCGAAGTGCCGGAAGAAAACATCCTCGGCGTGCTCA ACGGCGGCGTGAAAGTGCTGATGAGTGGTCTCGATTACGAGCGCGTCGTGCTGTCCGGCGGCCCGACCGGGATCATGCAGTCGTGCATGGACCTGATCGT GCCGTACATCCACGACCGCAAGCAGTTCGGTCAGAGCATCGGCGAATTCCAGCTGATCCAGGGCAAAGTCGCCGACATGTACACCCAGCTCAACGCCAGC CGCGCCTACCTCTACGCCGTGGCCCAGGCCTGCGAGCGCAACGAAACCACGCGCAAGGACGCCGCCGGGGTGATCCTCTACACCGCCGAACGCGCGACGC AAATGGCCCTCGACGCGATCCAGATTCTCGGCGGCAACGGCTACATCAACGAATTCCCGGCCGGGCGCCTGCTGCGTGACGCCAAGCTCTACGAAATCGG CGCTGGCACCAGTGAGATCCGGCGCATGCTGATCGGCCGCGAACTGTTCAACGAAACCCGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGAGCTGTCCATGGCTATCCTGCATACCCAGCTCAACCCCCGTTCAGCGGAGTTCGCCGCCAACAGCGCGGCGATGCTCGAACAGGTCGACGCCCTGC ACACCCTGCTCGCCCATGTGGCGCAGGGTGGCGGCGCGAAAGCCCAGGAACGCCACACCTCGCGCGGTAAACTGCTGCCGCGAGAGCGGATCAATCGCCT GCTGGACCCGGGCTCGCCGTTTCTGGAAATCAGCCAGCTCGCCGCGCACGCGGTGTATGGCGAAGACGTTCCCGCCGCCGGCGTAATCGCCGGGATCGGC CGGGTCGAAGGCGTCGAGTGCATGATCGTCGCCAACGACGCGACGGTGAAAGGTGGCTCGTACTACCCGCTGACCGTGAAAAAACACCTGCGCGCGCAGA CCATTGCCCAGCAGAACCGCTTGCCGTGCATCTATCTGGTGGACTCGGGCGGCGCCAACCTGCCGCGTCAGGACGAGGTGTTCCCGGATCGCGAGCACTT
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQVQSFVADQIAPRAAQIDHDNLFPADLWRKFGDMGLLGITVPEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGNHEQKSKYLPKLISGEHVGALAMSEPNAGSDVVSMKLRADKRGDRFVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDDVEVPEENILGVLNGGVKVLMSGLDYERVVLSGGPTGIMQSCMDLIVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERNETTRKDAAGVILYTAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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