Pseudomonas fluorescens AU5633, AA066_RS04145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU5633 Contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGCACTGAACAGAGATTCTGTGTGGTCGGGCTGATGTGCTGAGCGGCGAACGCGGCGTAGATGTCGGTGGCCCAGCCCTCGCGGTCGGGCACTTTGGC CGGCATCAGCCGCACTATTTCGGCCTTCACTTCGGCGGGCGCACGCGGCGCCGGCTCCTGACTGCGCTGGCCGGCACAACCGGCGAGCGCCAGCAGCGCA GCGAGGGTAATGAGTAATCGCATGTTGCTCCATCCAGTCCAATAAGCCAGAAACACCATACACAATCCGTGTAGGAGCTGCCGCAGGCTGCGATCTTTTG CCTTGGTTTCTAAAAGACAAGATCAAAAGATCGCAGCCTGCGGCAGCTCCTACAGGTGAATGTGTTTTCCGGATTGATGACAAACTGATTGCAAAACGTT ACTGCGAACTCCTATCATTTGCGCCTGGAGTCGTATTTGCGCAAGGAGTTCCCCGCGCAGTTCTAATTTTCTCACCGGCCGTACGCCTCCAGGTATCGAC
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| DNA Sequence for Gene |
>AA066_RS04145
ATGCCCGCTTCAACTCGACTCGCTGTCCCGTTCCGCCCGACGCTTCTCGCCCTGCTGTGCTCCTTGACCGTCACCGCCCACGCTGCCGATGAAAACGGCA AGGCGCTGGTGCTCGACAATGTCAACGTCAACGCCCAGGCACCGACGCCCAACGCCCTGCCCCCGGTCTACTCCGGCGGTCAGGTCGCCCGTGGTGGTCA ACTCGGCGTGCTCGGCAATCAGGACATGATGGACGTGCCGTTCAGCGCCGCGTCGTACACCGAACAGCTGATTCAGGACCAACAGGCGGAAAACGTCGCC GACGTCCTGCTTAACGATGCCTCCGTGCGTCAGGCTTCGGGCTTCTCCAACCAGGCGCAGGTGTTCATGATTCGCGGCCTGCCGCTGAACGGTGACGACA TTTCCTATAACGGTCTCTACGGCGTGCTGCCCCGGCAGATCATTTCCAGCGACGCCCTGGAGCGCGTGGAAGTGTTCAAAGGGCCGAACGCCTTCATCAA TGGCGTGACCCCGACCGGCTCCGGCATCGGCGGTGGCGTCAACCTGCAGCCCAAGCGTGCCGGCGACGAGCCGCTGCGCCGCTACACCACCGACATCAAC AGTGAAGGCCGGATCGGTCAGCACCTCGATATCGGCCAGCGTTTCGGCGAAGACAACCGCTTTGGCGCGCGGGTCAACCTGTCCCAGCGCGAAGGCGACA CCGGCATCGATCACGAAAACCAGCGCTCGAAACTGTTCGCCATCGGCCTCGATTATCGCGGTGACGCGCTGCGTATTTCCGGTGACTTCGCCTACCAGAA AGAACGCGTCAACGGTGGCCGCAACTCGGTCAACCTCGGCACCGCCACGCACATTCCGGACGCGCCGTCGGCCGACACCAACTACGCGCCAAAGTGGGGC TACACCGACATCGAAGACACTTTCGGCATGCTCCGCGCCGAATACGATTTGAACGACAACTGGACCGCTTATGTCGCCGGCGGCGCCAAGCACACCCGCG AAGTCGGCCGCTACAACTCGACCACGCTGGTGGGCAACAACGGCGCCTCGTACACCACCGGCTCGTTCATCCCCCACGACGAGGACAACACCAGCCTGAT GGCCGGCCTCAACGGCAAATTCAACACCGGCGCGGTTAGCCACAAGCTCAATTTCGGTTTGAGCGGCCTGTGGGCCGAACAGCGCAGCGCCTATGATTTC GACCTGACCCAGTACGCCAACAATATCTACCACCCGGTGGAAACGCCGTCGCCGGTCGGTAATTTTTCCGGCGGAGACCTCAGCGATCCGGGCATCGTCG GCAAGACCTTCAACCGCAGCCTCGCGCTCTCCGACACCCTCGGTTTCTTCGATGACCGCCTGCTGATCACCGCCGGGCTGCGTCGTCAGCAACTGGTGGT GCAAGGCTACAACTACGCCAGTTACGGCAGCGGTAGCCGCAAGTCGAGCTACGACGAATCGATCACCACGCCGGTCTACGGCATTGTCTTCAAACCGTGG GAGCACGTGTCGTTCTACGCCAACCACATCGAAGGTCTGGCGCAAGGCCCGACTTCGCCGACCAGCACCGGCGGTTTGCGCGTGACCAACGGCAACGAAG TCTACGCACCGGCGCGCTCCAAGCAGACCGAGGCCGGGGTCAAGGTCGACATGGGCACTTACGGCGCGAGCCTTGGCGTGTATCGCATCGAACAGCCGAG CGACGGTTACTGCGAAATCAACAGCGCCACCACCTGCACCTACGTGCGTGAAGGCGAGCAGATCAACAAAGGCGTAGAGATGAACGTGTTCGGCGAGCCG ATCAACGGCCTGCGCCTGATCAGCGGCCTGACGCTGATGGACACCGAACTGCGCAACACCCAGAACGGTGCCAACGACGGCAACCGCGCCATCGGCGTGC CGAGCTTCCAGTTCAACGCCGGCGCCGACTGGGATGTACCGGGCCTGCAAGGCGTGGCGCTGAATGCGCGGATGCTGCGCACCGGCGGCCAATATGCCGA TGCGGCCAACAACCTCAGCCTGCCAACCTGGAACCGCTTCGATGCCGGTGCGCGTTACGCCTTCAAGGTCGCGCAGAAAGACGTGACCCTGCGTCTGGGC GTCGAAAACCTGGCCAACAAGAAGTACTGGGAATCGGCGCAGGGCGGCTATCTGACCCAGGGTGAGCCACGGGTGGCGAAGTTGTCGGGCACCATCGACT TCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCATCCCGTCGTAACAAAGGCCCCGCAGCTTGACCGTTGCGGGGCCTTTTTTTGTTTTTGTGGCGGGAGGCAAGCCCCCTTCGCGAGCAAGCTCGCT CCCACATTGGAATGCGTTCGACTGTGGGAGCGAGCCTGCTCGCGAAGAGGCCGGCACTGGCTAGCCTTTCCATCTGATCCATACTTGCTCCACAGCCAAC GGAGGACAGGCTCATGCACCGCAGCGACGTTCTGATCATCGGCGCCGGCCCGACCGGTCTGGTGCTGGCTCTGTGGCTGAGCAAACTGGGCGTGCGCGTG CGCATCATCGACAAGACCTCCGCGCCCGGCACCACCTCGCGGGCGCTGGCGGTGCAGGCGCGCACGCTGGAGTTGTATCGTCAGCTGGATCTGGCCGACA CCGTGGTGCGCAACGGGCACAAGGTCGCGGCGGCGCACTTCTGGGTCAAGGGCAAACCGGTTGCGCAGTTGCCGCTGCAGCGCATCGGCGAAGGCCTGAC
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| Amino Acid Sequence |
>TonB-dependent receptor
MPASTRLAVPFRPTLLALLCSLTVTAHAADENGKALVLDNVNVNAQAPTPNALPPVYSGGQVARGGQLGVLGNQDMMDVPFSAASYTEQLIQDQQAENVA DVLLNDASVRQASGFSNQAQVFMIRGLPLNGDDISYNGLYGVLPRQIISSDALERVEVFKGPNAFINGVTPTGSGIGGGVNLQPKRAGDEPLRRYTTDIN SEGRIGQHLDIGQRFGEDNRFGARVNLSQREGDTGIDHENQRSKLFAIGLDYRGDALRISGDFAYQKERVNGGRNSVNLGTATHIPDAPSADTNYAPKWG YTDIEDTFGMLRAEYDLNDNWTAYVAGGAKHTREVGRYNSTTLVGNNGASYTTGSFIPHDEDNTSLMAGLNGKFNTGAVSHKLNFGLSGLWAEQRSAYDF DLTQYANNIYHPVETPSPVGNFSGGDLSDPGIVGKTFNRSLALSDTLGFFDDRLLITAGLRRQQLVVQGYNYASYGSGSRKSSYDESITTPVYGIVFKPW EHVSFYANHIEGLAQGPTSPTSTGGLRVTNGNEVYAPARSKQTEAGVKVDMGTYGASLGVYRIEQPSDGYCEINSATTCTYVREGEQINKGVEMNVFGEP INGLRLISGLTLMDTELRNTQNGANDGNRAIGVPSFQFNAGADWDVPGLQGVALNARMLRTGGQYADAANNLSLPTWNRFDAGARYAFKVAQKDVTLRLG VENLANKKYWESAQGGYLTQGEPRVAKLSGTIDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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