Strain | Pseudomonas fluorescens strain AU5633 Contig_2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATCAGCGCCGCCTGACTGCCCTGAGCGTCGAGCACCGAATAGAAGTCCTTCTGCTGCCACGCACGTTTGCCGAAAGCGTCGTAGAACAGTCGCGTGGTCG GCGCAGCCTGAGTGCGCTCGCCGTCGTAGACCGGCATCTTGCTCGCGCCACGGCCAGCGCCTTCACCGCTGCCCAGGTTGAGCTGGCACGGCGAGTCGTA GCACGCATGGCAGGCCACGCATTTCTCGGTGAAGATCGGCTGGATGTCTCGGGTGTACGAAATAGCAGCAGAGATCGCGGGTTCCTGCGCCACGGCGCCC CAGCTTAAAAACAGCAAGAAAATGCTGATGACGCGGTACGACATGCCCTTGATCCCGATCCAGAAAAAAACGTCCGCGATTCTACAGTATGACGCCCGTA CCAACATGAGCGATATTCATGCAAAAGCGGCACATGCTCCAAAAGCGCACAGGTTTGCTATGATCCCGGCCCTTCGTCATGGTCTTTTCGAGTAGTCCCA
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DNA Sequence for Gene |
>AA066_RS04035
ATGTCCGATCGCAGCGTCCGCCTTCAAGCTCTCAAGCAAGCCCTCAAAGAGCGCATCCTGATACTCGATGGCGGCATGGGCACGATGATCCAGAGCTACA AGCTCGAGGAGCAGGATTATCGCGGCAAACGCTTCGCCGACTGGCCGAGCGACGTCAAGGGCAACAACGACCTGTTGGTGATCACCCGTCCGGACGTGAT CGGCGGCATCGAAAAGGCTTATCTGGATGCCGGCGCCGACATTCTGGAAACCAACACTTTCAACGCCACGCGCATTTCCATGGCTGACTACGGCATGGAA GAACTGGCGTACGAATTAAACGTAGAAGGCGCGCGTCTGGCGCGCAAGGTGGCCGACGCCAAGACCGCCGAGAACCCGGACAAGCCACGCTTCGTTGCTG GCGTACTCGGCCCGACCAGCCGTACCTGCTCGCTGTCGCCTGACGTGAACAACCCAGGCTACCGCAACGTCACCTTCGATGAATTGGTGGAAAACTACAC CGAAGCCACCAAAGGCCTGATCGAGGGCGGCGTCGACCTGATCCTGATCGAAACCATCTTCGACACGCTCAACGCCAAAGCCGCGATCTTCGCCGTACAA GGCGTCTTCGAAGAACTGCACATTGAACTGCCGATCATGATTTCCGGGACCATCACCGATGCGTCCGGCCGCACCCTCTCGGGCCAGACCACCGAAGCGT TCTGGAACTCGGTGGCCCACGCCAAGCCAATCTCGGTCGGCCTCAACTGCGCCCTCGGCGCCAGCGAACTGCGTCCGTATCTGGAAGAGCTGTCGAACAA GGCCAGCACTCACGTGTCGGCGCACCCGAACGCCGGTTTGCCGAACGAATTCGGCGAGTACGACGAATTGCCGGTGGACACCGCCAAGGTCATCGAAGAA TTCGCCCAAAGCGGTTTCCTCAACATCGTCGGCGGTTGCTGCGGCACCACTCCGGGCCACATCGAAGCCATCGCCAAAGCCGTCGCCGGTTACGCGCCGC GGCAGATTCCGGACATCCCCAAGGCCTGCCGCCTGTCGGGTCTGGAGCCGTTCACCATCGATCGCAGCTCGCTGTTCGTCAACGTTGGCGAGCGCACCAA CATCACCGGCTCCGCGAAGTTCGCCCGTCTGATCCGTGAAGACAACTACACCGAAGCCCTGGAAGTCGCCCTGCAGCAGGTCGAGGCCGGCGCCCAGGTG ATCGACATCAACATGGACGAAGGCATGCTCGATTCGAAGAAGGCCATGGTGACCTTCCTCAATCTGATCGCCGGCGAGCCGGACATCTCCCGCGTGCCGA TCATGATCGACTCGTCGAAATGGGAAGTCATCGAAGCCGGTCTGAAGTGCATTCAAGGCAAGGGCATCGTCAACTCGATCAGCATGAAAGAAGGCGTCGA GCAGTTCATCCATCACGCCAAGCTGTGCAAACGCTACGGCGCGGCAGTGGTGGTCATGGCCTTCGACGAAGCCGGCCAGGCCGACACCGAGGCGCGCAAG AAAGAGATCTGCAAACGCTCCTACGACATTCTGGTCAACGAAGTCGGCTTCCCGCCGGAAGACATCATCTTCGACCCGAACATCTTCGCCGTGGCCACCG GCATCGAAGAACACAACAATTACGCTGTGGACTTCATCAATGCCTGTGCCTACATCCGTGACGAACTGCCGTATGCGCTGAGCTCCGGTGGCGTGTCCAA CGTGTCGTTCTCGTTCCGCGGCAACAACCCGGTGCGTGAGGCGATCCACTCGGTGTTTCTGCTGTATGCGATCCGCGCCGGCCTGACCATGGGTATCGTC AACGCCGGTCAGCTGGAGATCTACGACCAGATCCCGCAGGAACTGCGCGACGCCGTCGAAGACGTGATCCTCAACCGCACGCCGGAAGGCACCGACGCCC TTCTCGCCATCGCCGACAAGTACAAGGGCGACGGCAGCGTCAAGGAAGCCGAGACCGAAGAGTGGCGCAGCTGGGACGTCAACAAGCGTCTGGAGCATGC GCTGGTCAAGGGCATCACCACCCACATCGTCGAAGACACCGAAGAGTCGCGCCAGTCATTTGCCCGCCCGATCGAAGTCATCGAAGGCCCGCTGATGTCC GGCATGAACATCGTTGGCGACCTGTTCGGCGCCGGCAAAATGTTCCTGCCGCAGGTGGTCAAATCCGCCCGCGTGATGAAGCAAGCCGTGGCGCATTTGA TCCCGTTCATCGAACTGGAAAAAGGCGACAAGCCGGAAGCCAAGGGCAAGATCCTGATGGCCACGGTAAAAGGCGACGTGCACGACATCGGCAAGAACAT CGTCGGCGTGGTGCTGGGTTGCAACGGCTACGACATCGTCGACCTCGGCGTGATGGTCCCGGCGGAGAAAATCCTTCAGGTCGCCAAGGAAGAAAAGTGC GACATCATTGGCTTGTCCGGCCTGATCACCCCGTCGCTGGACGAGATGGTCCACGTTGCCCGGGAAATGCAGCGTCAGGATTTCCACCTGCCGCTGATGA TCGGTGGCGCGACCACCTCCAAGGCGCACACCGCCGTGAAGATCGAGCCGAAGTACAGCAACGATGCGGTGGTCTACGTGACCGACGCCTCGCGTGCGGT CGGCGTCGCGACGCAGTTGCTGTCCAAGGAACTCAAGGCCGGATTCGTCGAGAAGACCCGCGCCGATTACGTCGACGTGCGTGAGCGCACCGCCAACCGC AGCGCCCGTACCGAGCGCCTGAGCTACGCGGCGGCGATCGCCAAGAAGCCGCAGTTCGACTGGGCCAGCTACACGCCGGTCAAACCGACCTTCACCGGCA CCCGCGTGCTGGATAACATCGACCTCAACGTGCTGGCCGAATACATCGACTGGACGCCGTTCTTCATCTCCTGGGACCTGGCCGGCAAGTTTCCGCGCAT CCTCGAAGACGAAGTGGTCGGTGAAGCCGCCACCGCGCTGTACAAGGATGCGCGTGAAATGCTCACCAAGCTGATCGACGAGAAGCTGATCAGCGCCCGT GCGGTGTTCGGTTTCTGGCCGGCCAATCAGGTACACGACGACGATATCGAGCTGTACGGCGATGACGGCAAGCCCATGGCGCGCCTGCATCATCTGCGTC AGCAGATCATCAAGACCGACGGCAAGCCGAACTTCTCGCTGGCCGACTTCGTCGCGCCGAAAGACAGCGAAGTGACCGATTACGTCGGGGGGTTCATCAC CACCGCCGGCATCGGCGCCGAAGAAGTGGCCAAGGCTTATCAGGACGCTGGCGACGACTACAACTCGATCATGGTCAAAGCCCTCGCCGACCGTCTGGCG GAAGCTTGCGCCGAATGGCTGCACCAGCAAGTGCGTAAAGAACACTGGGGTTATGCCAAGGACGAAGTGCTGGACAACGAAGCGCTGATCAAAGAGCAGT ACTCCGGTATCCGTCCGGCACCGGGTTACCCGGCCTGCCCGGATCACACCGAGAAGGCCACGCTGTTCACCCTGCTCGATCCTGAGGCCAGCGAAATGCG CGCGGGCCGCAGCGGCGTGTTCCTCACCGAACACTATGCGATGTTCCCCGCAGCCGCGGTCAGCGGCTGGTACTTCGCGCACCCGCAGGCGCAATACTTT GCCGTGGGCAAGGTCGACAAGGATCAGGTGCAGAGCTACACCTCGCGCAAAGGTCAGGAACTGAGCGTGACCGAGCGCTGGCTGGCGCCGAACCTCGGTT ACGACGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCGCGACGGTCACTCCACGGATCAGCCGGGGAGTGACCGTTCACCAGGTTTTACGCGCCTGACGATTGCCCGGATGAGCCGGGCATTGGTGCCTTGTCGG CAGACAAACCGATCCATTCAATCGCCTGTCGCGTCAATTCGATAAGCCTGGCATTGCGCGCCGCTGCCTGATCGAACAACCGGCTCAGATAAAGCGGGTC GTCAACACTCAGACCGTCGTCCTCGCCCTCCTCCATCAACTGCCCTTCATCCATTTGTCTGAACGCTTCGGGCTGCTGCTCCTTGAGGTAATCCAGCCAG TAATCGCGCTGGATCAGATCCTCCAGAAACCGGTCGGAGTGCTCCGCGCTAACCACCTCGGCCCGCGCATCGAACAACTGCTGAGGCGTTACACCGGAGG CAAATTTCATGTTTTTCGGCTGCCCGGGCAATTCCAGTCCATCCTCCCAGCCACCGGTCAGACCGATCCGGTAGCCGAGGCGGACTTCGGCTTCGTCAAA
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Amino Acid Sequence |
>methionine synthase
MSDRSVRLQALKQALKERILILDGGMGTMIQSYKLEEQDYRGKRFADWPSDVKGNNDLLVITRPDVIGGIEKAYLDAGADILETNTFNATRISMADYGME ELAYELNVEGARLARKVADAKTAENPDKPRFVAGVLGPTSRTCSLSPDVNNPGYRNVTFDELVENYTEATKGLIEGGVDLILIETIFDTLNAKAAIFAVQ GVFEELHIELPIMISGTITDASGRTLSGQTTEAFWNSVAHAKPISVGLNCALGASELRPYLEELSNKASTHVSAHPNAGLPNEFGEYDELPVDTAKVIEE FAQSGFLNIVGGCCGTTPGHIEAIAKAVAGYAPRQIPDIPKACRLSGLEPFTIDRSSLFVNVGERTNITGSAKFARLIREDNYTEALEVALQQVEAGAQV IDINMDEGMLDSKKAMVTFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFIHHAKLCKRYGAAVVVMAFDEAGQADTEARK KEICKRSYDILVNEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFINACAYIRDELPYALSSGGVSNVSFSFRGNNPVREAIHSVFLLYAIRAGLTMGIV NAGQLEIYDQIPQELRDAVEDVILNRTPEGTDALLAIADKYKGDGSVKEAETEEWRSWDVNKRLEHALVKGITTHIVEDTEESRQSFARPIEVIEGPLMS GMNIVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIELEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQVAKEEKC DIIGLSGLITPSLDEMVHVAREMQRQDFHLPLMIGGATTSKAHTAVKIEPKYSNDAVVYVTDASRAVGVATQLLSKELKAGFVEKTRADYVDVRERTANR SARTERLSYAAAIAKKPQFDWASYTPVKPTFTGTRVLDNIDLNVLAEYIDWTPFFISWDLAGKFPRILEDEVVGEAATALYKDAREMLTKLIDEKLISAR AVFGFWPANQVHDDDIELYGDDGKPMARLHHLRQQIIKTDGKPNFSLADFVAPKDSEVTDYVGGFITTAGIGAEEVAKAYQDAGDDYNSIMVKALADRLA EACAEWLHQQVRKEHWGYAKDEVLDNEALIKEQYSGIRPAPGYPACPDHTEKATLFTLLDPEASEMRAGRSGVFLTEHYAMFPAAAVSGWYFAHPQAQYF AVGKVDKDQVQSYTSRKGQELSVTERWLAPNLGYDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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