Pseudomonas fluorescens AU13852, AA097_RS10225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU13852 Contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCTGTTCGACTCTTTTTCCAGCAGCCACGTGGTTATATTTTTGTCGCACCGAATTGAACTTGCTCTGCAAGAAGGTCTTCAGAAATGTCCAACAGTATG GGTATCGCCAGCGCGTTTGTTTTGTCTTCCCTGTTCGTGGCCCCGATGGCCATGGCCGAAGAATCCCAGGGATTCGTGGCAAGAAATGCCGCACGCGCCG CCGCTTTCGAACAAGCCCAGATCGCCCAGGCAGCCCAGCAGCAAAACACTCAGCAAGCCCAGAAGATCACTGCCGAACAGAGCAAGAGCGACACGCAGAA AGACAGTTGATCCTAGCTTTCGACTTGTTTCCCTCGACAACTTCTCTGCTTTCAACCCGGGAGTAAGTTGTCTTAAAGCCGCTGAGTTCAGCGGCTTTTT TTTGCCGTATGGAAACCCTCGGCATACTCGTCATACCCAGAACAAGAAACACCCGAATTCACAATAAGAAGCCATTGTCGTTCACCAAAGGAGCTAAACG
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| DNA Sequence for Gene |
>AA097_RS10225
TTGTTCAAGACCTCACTGAAGATCAGCCCCCTGTTCATTGCAATCGCCGCAACGATCCCAACACTCGGGCAAGCCGCCGAAGACCCCAAGGCCGAGGGTT TTGTCGAGGGTTCGAGCCTCAAGCTCAACGCCCGCAACTACTACATGAACCGCAACCGCCTGCAGCAGAACAACGACAACATCGAATGGGGCCAGGGTTT GCTCGGCGTCTTCGAGTCGGGCTACACCCAGGGCACCGTGGGTTTCGGCCTTGATGCCAACGCCATGCTCGGCCTCAAGCTGGACGGCGGTGGCGGCACC ACCAATTCGAGCATCCTGCCTATCAGCGACGATGGCCGGCACAAGGCACCCGGCTCGTTCTCCACCGCCGGCGCCACCTTGAAAATGCGCGCCTTCGATA CCGAGCTCAAGGCAGGCGACCTGTTCCTCAACAACCCGGTGATCGCCGGCGGCATGAGCCGCATGCTGCCCCAGACCTTCCGCGGCGTGAGCCTGACCAA CCACAGCTTCGACGGCTGGTTGATCGAGGGCGGCCAGGCCAGCTTCACCAAGCCGTACAACCAGAGCGGACACAAGCGCATCGGTACTTCCTACGGCAGC CTGCGCGAGGGCGACGAGAGCCTGCACCTGAACTGGGCCGGCGTGGCCTGGAGCGGCGTTCCAGGACTGACCAGCAGCCTCTATGCGTCCGAACTCAAGG ACATCTGGAATCAGTACTACTACGACCTGGACTACACCTACGCGGTCAACGAACTGGTCAGCCTCAACCCGGGCCTGTACTTCTATCACACCCAGGACAC CGGCCAGGCGCTGCTGGGCAACATCGACAACAACACCTACAGCCTGCACTTCACCGTCGGCGTGGGGAACCACAGCGTCACCGCGGCCTACCAGCGGGTC AATGGCAACACGCCATTCGACTACATCGCCCAGGGCGACAGCATCTACCTGGACAACTCCCAGCAGTATTCGGACTTCAACGGGCCCAACGAGCGTTCGT GGAAGCTCAAGTACGCCTATGACTTTGCCGGCCTCGGCCTGCCGGGCCTGACTTCGGCGCTGTCCTACTCGCGTGGCGAGCTGGACCTGACCAAGGTCGA TCCGGCCAGCCGCGGCTATGCCAGCTGGTACAGCGCCGACGGCAAGAACGCCAAGCACTGGGAGCGCGACCTGGACCTCAAGTACGTGGTGCAGGGCGGC AGCGCCAAGGACCTCGCCGTACGCCTGCAGTGGGCCACCAACCGTGGCGGCAACGGCTACGGCGCGCTGGACAACGACACCGACGAATACCGGGTGATCG TCGACTACCCGATCAACGTCTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCACTCAAACAAAAAGACCAGCATGTTTTGCTGGTCTTTTTTTTATCGGAGATTTATACAGGCGCGCAGGCGTGACCGATTTCTGTAGCCCACGTCCAC ACTAGACTCAAAACTGTCGACGCAGCAGAAATCAAAATCATGAACGTGAGTAGTGCGACACCCCGCACAGGGAAAATCGCGTCAAATACCGAGCGCCTGC TGATCCTCTCCAGCTCGCTGATCGTTGTAGCCATTCTCGGCATCGTCACCTACCTGTTGATCCGCGAGCACGCCGCTGCCGAACAGGCTGCCACACGTGC CGCCAACAACATCGTGCAATTGATCGACGCCGATGTATTGCGCAACGTCGAGCTCTACGACCTGTCTCTCAAGGGACTGATCAGTGCCGCGCAACGTGAC GATCTGAAGGATGCCTCGGCGTCCATACGTCACCTGGCGCTGTTCGACCGGGCCACCGCAGCGCCCTACAAGGGCGACATCCTCCTGCTGGACAGGCACG
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| Amino Acid Sequence |
>porin
MFKTSLKISPLFIAIAATIPTLGQAAEDPKAEGFVEGSSLKLNARNYYMNRNRLQQNNDNIEWGQGLLGVFESGYTQGTVGFGLDANAMLGLKLDGGGGT TNSSILPISDDGRHKAPGSFSTAGATLKMRAFDTELKAGDLFLNNPVIAGGMSRMLPQTFRGVSLTNHSFDGWLIEGGQASFTKPYNQSGHKRIGTSYGS LREGDESLHLNWAGVAWSGVPGLTSSLYASELKDIWNQYYYDLDYTYAVNELVSLNPGLYFYHTQDTGQALLGNIDNNTYSLHFTVGVGNHSVTAAYQRV NGNTPFDYIAQGDSIYLDNSQQYSDFNGPNERSWKLKYAYDFAGLGLPGLTSALSYSRGELDLTKVDPASRGYASWYSADGKNAKHWERDLDLKYVVQGG SAKDLAVRLQWATNRGGNGYGALDNDTDEYRVIVDYPINVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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