Pseudomonas fluorescens AU13852, AA097_RS16525
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 423 | 584 | 2.0E-41 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 317 | 412 | 0.00163251 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 602 | 845 | 3.14E-80 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 427 | 582 | 1.6E-46 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 64 | 219 | 1.2E-15 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 305 | 421 | 1.6E-10 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 607 | 839 | 2.96981E-92 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 431 | 588 | 5.57E-47 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 425 | 596 | 3.3E-55 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 603 | 834 | 1.5E-68 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 297 | 413 | 7.5E-14 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 288 | 838 | 0.0 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 415 | 587 | 5.6E-61 |
| Coils | Coil | Coil | - | - | 279 | 299 | - |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 421 | 587 | 1.1E-39 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 597 | 839 | 5.9E-96 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 308 | 376 | 2.9E-6 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 597 | 851 | 2.6E-88 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 309 | 408 | 4.6E-5 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 427 | 585 | 8.43965E-59 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 296 | 413 | 3.62E-14 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.