Pseudomonas fluorescens AU13852, AA097_RS15850
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU13852 Contig_45, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACCGCGGATCCACGGCGGCAGTTGGCAGATCAACACCAACAACCTGCGGGCGATCCACCAGGCCGTCAGCCAGGCCCAGGGGGGCTGGGTGGCACAG AGCGAGGAACACTGCGACCACCGCGAGTTGAAAAAACTCAGCCTGCATGTCCTGGTGGCCGAAGACAACGTGATCAACCAGTTGATCCTCAAGGACCAAC TGGAAGAACTGGGGTGCAGCGTGGAGCTGGCCTCAAACGGTGAAGAAGCCCTCAGCATCTGGAAGGCCGGTCGCTTCAACGTTGTACTGACCGATGTAAA CATGCCGAAACTCAACGGCTATGAACTGGCCAAGGAGCTTCGGCGTCAAGGCTGTGCGATCCCCATCATCGGGGCAACGGCCAATGCAATGCGCGGAGAA GAAGAGCTCTGTCTTGCAGCCGGGATGAACCACTGCCTGGTGAAGCCCTTTGCATTAAGAGCGTTGTTCAACTATCTGGCGCCCTATGAAAGAGCCCCCC
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| DNA Sequence for Gene |
>AA097_RS15850
ATGAAGTCCTGTAGCATTTTGATCGTCGAAGATCAGCCGTTTCAGTACATGTACCTGCAACACTTGTTCAACGAGCTGGGGCCCTACCAGCTGGAGGTAG CGAGCAGCGGCAGAGAAGCGCTGGAACGCCTCAAGCAGCGGCACTTCGACCTGGTACTGACAGATCTGCTGATGCCCGGCATGGATGGTGTGCAGTTCAT CCAGAGCCTGGCCACCCATCGTGTGCGCCCGGCGCTGGCCATCATGAGTGCGTCCTCCCGGCGCATGCTGATGGGCGCCAGCCTGGTGGCCCGCAACCTG GGGCTGAAGGTCATCGGCTTGATTTCCAAACCCGTGAACCTGGCTGCATTGCGTGCACTCACCGCTCAACTGCCGGGGCTCGCCAACGACAGCAGCCCCC CACAGATCGGGGTCGAATGCAGCCCAGAGACCTTGCGCGAAGCCCTGCGCAACGGGCAGATCCAGGCCTGGTTCCAGCCCAAGAAAGCCTTGAACAACGG TCGCATCGTCGCCGCCGAAGCCCTGGCGCGCTGGCTCCACCCACAACACGGCATGCTCCTGCCTTGCGACTTTCTGCCCGCACTCACCGAGGCCCGCCTC GAAGAAGAACTGCTATGGCTGATCCTGGAACAGGCCCTGGAGGCCCAGGTGAAGTGGCGCGAAGACGGCTATGACATCCCGGTGTCCATCAACCTGCCGA CCCACCTGCTCAACAGCCCCGACCTGGCCGACCGCCTGCACGACTTCGTGATCCAGCACAACGGTGTGCCGGCCAGGATCTGCTTCGAGCTCATGGAATG TTCGACCCCGGAGCACATCAGCAACTTCTACGCCGGTGCCTGCCGCCTGCGCATCAAGGGCTTCGGCCTGTCCCAGGATGACTTCGGCAAGGGCTACAGT TCCTACATGAACCTGGTGTCGACCCCCTTCACCGAATTGAAGATCGACCGGGGGCTGGTCCAGGGCTGTCACAACAATGAAGAAATAGCCCAGGCCCTGA CCTGCATCATCGCCCTGGGCCGGCAACTGGGCCTGACGGTCGTCGCCGAAGGCGTGGAAAGCGCCCACGAACTGGCCTTGTTGCGCAAGATCGACTGTAC CCAGGTGCAGGGCTTCCTGATTTCCCATGCGGTCTCCTCGCAACAGTTTCAGCAGCTGCTGGCCCAAGACGGGCCGGCCACGGTGTATTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGATGAACCCATTACCTGCCCGCGCAACAGTCACTCATTGCTGACCGTCCTGCCCCGGAGATAGGAATCTCGGCAGGGCCCTTATACGTGTTTGAGAAA TCAGTAATGAAAGAAAGCAGCACCCTGCTGGAGAACCTGGCTCACCGCTCGCCCCGATTGAACATGGGTGTGATGCTGCTGGGCCTGGCGCTGCTGCTGT TCGCCACCCTGTACTGGACCCTCGAACACCTGTTCGACGAACAGCACAGCAATGTGCGCTTGCACTTCGCCCAACTGATGGAGAACATCCAGGAGCAGGA ACTGTTTCTCCAACGCCTGGCCACGCGCCATTCGATCGAGGCCTTGAGGGTAGACGCCCCTCCTCACCTGAACCTGCAGGCCCTCGCACCCGCCACGGGC CAGCAATCGTTCTTCACGATGCCCTTCAGCCTGAGTTTCTACCCCCAACAGCCGTCGGCTGACGAGCTGCCCAGGGTGTTCGCACTGGGGCTACAGCTGT
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MKSCSILIVEDQPFQYMYLQHLFNELGPYQLEVASSGREALERLKQRHFDLVLTDLLMPGMDGVQFIQSLATHRVRPALAIMSASSRRMLMGASLVARNL GLKVIGLISKPVNLAALRALTAQLPGLANDSSPPQIGVECSPETLREALRNGQIQAWFQPKKALNNGRIVAAEALARWLHPQHGMLLPCDFLPALTEARL EEELLWLILEQALEAQVKWREDGYDIPVSINLPTHLLNSPDLADRLHDFVIQHNGVPARICFELMECSTPEHISNFYAGACRLRIKGFGLSQDDFGKGYS SYMNLVSTPFTELKIDRGLVQGCHNNEEIAQALTCIIALGRQLGLTVVAEGVESAHELALLRKIDCTQVQGFLISHAVSSQQFQQLLAQDGPATVY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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