Pseudomonas fluorescens AU13852, AA097_RS18875

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU13852 Contig_41, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCCTGCAAAAGTTCATCGTTCGTCTCCCAGGCGACCTGCACAACCAGCTCAAACACATTGCCAAACGAGAAAACCGCAGCATGAACAATGAAATCGTCGA CCGGCTGGAAAAGTCCCTGGTCGTCGATGAAACCCGTGAGATGAATGAGAAACTCATCAGCCTGCTGCTGCGCAAGGTCGATTCCCTGGAGGAGCGGATC AAGTACCTGCAGATGGGCCACCCGGAGCCCGAGCAGGATTGCCCACCGCCGTGTTACGCAAGGACTTGAAGCGGCCACTCCCGCCACGCGATCTTCTGCC TCTCCCGCCTTTACCCCCTCGCTGCAGCTTGTATGATGGCGCCTGCCCGACAGTACCCAGCGGCAACCGCCAGGCCCCGGCCTGATGCTCGCAGGGCTCC CCCGCTGTTCCTCACTACACACGCAGGTCGACGCTCCTAGCCTTCCCAGGAACCTCCCCCGGCTTCTGCCATGGGGCCGCGTCGCCTTCTAGGATTGTTC
DNA Sequence for Gene
>AA097_RS18875
ATGAGCCGGATTCACCCGACTGCCCCCGCGCGCACCTGCAGCTCAGCTTTGCCCCTCAACCGCCTGACCCTGGGCCTGCTGCTGGCCGGCAGCAGCGCCG TGGCCAACGCCGCCGGCACCCAGTTGCCGACCCAGACCGTCAGCGGCGAAGAACCCTACGGCTATCGCGCCGACAGCGCCTCGGTGGGTGGTTTCAGCGA AGCGCCCTTGCTGGATACCCCGGCCTCCATCAGCGTGATCAATGAAGACATGATCCTCGACCAGCAGGCCCGGCTGCTCAGCGACGTGCTGAAGAACGAT GCCTCGGTGGGCCAGAGCTACGCGCCGGTGGGCTATTACGAAAACTTCGAGGTGCGCGGCTTCTCGCTGAACGCGGCCAGCAGCTACAAGATCAACAACC GCACCATCACCGGCGAGCAAAACGTCGCCCTGGAAAACAAGCAGCGGGTGGAACTGCTCAAGGGCCTTTCCGGCCTGCAAAGCGGGGTCAGCGAGCCCGG CGGGCTGATCAACTATGTGACCAAGCGGCCCATGGACATTCGTTCGGTGACCATCTCCACCGACGATCGCGGCAGCGGTTATCTGGCCACCGACGTGGGC GGCTGGTTCGGCAGCGAACAGCAGTTCGGCCTGCGCGCCAACCTGGCCCATGAAGACCTGCACTCCTATGTCGAGCACACCAACGGCCAGCGCGACTTCG CCTCCCTGGCCTTCGACTGGAACATCAGCCCCGACGCCCTGCTGCAACTGGACATCGAATACCAGAACAAGCAGCAGCGCTCGGCCCCGGGCTATCAACT GCTGGGCGGTTCCAGCCTGCCCCACCACGCCTCGCCGAAAAGACTCCTGGGGCACCAGAGCGGGTCAAAGCCGGTGACCAATGAATCGCTGAACATCGGC GGCAATTTCGAGTACCGCTTCAACGATGACTGGAAGGGCAACCTCAGTGCGTCGCGCAGCAAGGTGGTGATCGATGACTACAGTTCGTTTGCCTGGGGCG GCTGCACCACCGGCTGCATCAATGCCAACGGCAACTACTTCAGCCCCGAAGGCAACTACGACATCTACGACTTCCGCAGCCCCGACGACACCCGGCGCAA CGATGAAGTGCAGGCGGTGCTCAATGGCCGCTTCGAGGCCGCGGGCCTGGGGCATGAGTTGAGCGTGGGGACCAGTGCGTTTCGCCGAGTGGTGGACCGG CGCGAGTCCATCAATCAATGGATTGGCACGGGCAATATCCAGAGCGAGCCGGAAAACTTCGACCGCTACAACGGCGCCCTCAACGACTCCCACAAACGCC TCGACAGCCGCCAATACGGCCTGTTCCTCAACGATCGCATCAGCTTCAACGAACAGTGGCAGACCGTTCTCGGCGGACGCGAAGTACGCCTCGACGAAGA GAGCTTCGACAAGGACGGCGTGCGCGATCGCCACACCCAGCGCTATGTATTCCTGCCCCAGGCCGCGCTGATCTACAAACCGGTCAACAACATTTCGCTG TACACCCAGTACAGCAAGGGCTTGTCCCTGGGTGGCCAGGCCCCCTGGTTCGCCAGCAACAGTGGCGACACCCTCGCCCCCACCGTCTCCCGGCAGATCG AAGCCGGGGTCAAGTACGACTGGCAGCGCATGAGCTTTACCGCCGCCCTGTTCCAGATGCGCCAGGCCTACCAGTACTCACGCCCCGACGCTGCCGGCGG TTTCACCTACGTCCAGCAGGGCCAGCAAAAGAACACCGGCCTGGAGCTCTCCGCCAACGGCTGGGCCACCCAGCGCCTGCAGATTGCCGCCAGCGTCGCG GCGATCCGCTCCCGGGTCGAGGGTACCGGCACCCCGGCCTACGAAGGGCACCAGACCCTCAACGTCCCGCGCCTGCGAGCCAGCCTGCAGGGCGACTACG CCCTGCCCTGGCTCGACGGCCTGGCCCTGCTGGGCGGCATGCAATACAGCGGCAGCCAATACGCCGACCGCCAGGGCAACGTCGCCACCGGCGCCTACGC CATCTTCAACATCGGCAGCCGCTACAGCACTCGAATTGATGGCTACGACACGGTATTTCGCCTGACCGTGGACAACCTGTTCGACAAGCGCTACTGGCGC GACACCGGGGAATACATGGGCGACGACTACCTGTTCCAGGGCGCGCCGTTGACGGCGCGGTTGAGTGCTTCGGTGAACTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGCAGACGGCCCCTTCCTACCTCTCCCGTAGGAGCCGGCTTGCCGGCGAAGGCGATCTCGGGGGCCCCTTCGCTGGCAAGCCAGTGGCTATGCGAATCTG TCAGGCATGCACAAAAAAGCCGGTCATCAAGACCGGCTTGTCAGCGCCTGGTCTGCTCGCCATCAAACCGGCTGCAAAGCCCGCAAGGCTTCAGGGTACT GGCTGGCCACACGCAGCAGCGTTTGAGCCGCGCCTGTCGGCTGGCGCCGGCCTTGCTCCCAATCCTGCAGTGTACGCAGGCTGACCCCCAACAGCGTGGC AAACGCACTCTGAGAGAGCCCCACCTTAGCCCGGGCCTCTGCCGCCCCTGACAGTTTTACCACCGTTGCACGCGCCGCCTTGCCAGCTTTCATCTGGCCC ACCGAAGTCAGCAAATCCTTCTGAAACTGCTGCAGTTCATGGTCCATGACTGATTCCCTCTTTCAATTGATTCAGAAAGCCGATGGGCAGATTGTCTAAC
Amino Acid Sequence
>TonB-dependent receptor
MSRIHPTAPARTCSSALPLNRLTLGLLLAGSSAVANAAGTQLPTQTVSGEEPYGYRADSASVGGFSEAPLLDTPASISVINEDMILDQQARLLSDVLKND ASVGQSYAPVGYYENFEVRGFSLNAASSYKINNRTITGEQNVALENKQRVELLKGLSGLQSGVSEPGGLINYVTKRPMDIRSVTISTDDRGSGYLATDVG GWFGSEQQFGLRANLAHEDLHSYVEHTNGQRDFASLAFDWNISPDALLQLDIEYQNKQQRSAPGYQLLGGSSLPHHASPKRLLGHQSGSKPVTNESLNIG GNFEYRFNDDWKGNLSASRSKVVIDDYSSFAWGGCTTGCINANGNYFSPEGNYDIYDFRSPDDTRRNDEVQAVLNGRFEAAGLGHELSVGTSAFRRVVDR RESINQWIGTGNIQSEPENFDRYNGALNDSHKRLDSRQYGLFLNDRISFNEQWQTVLGGREVRLDEESFDKDGVRDRHTQRYVFLPQAALIYKPVNNISL YTQYSKGLSLGGQAPWFASNSGDTLAPTVSRQIEAGVKYDWQRMSFTAALFQMRQAYQYSRPDAAGGFTYVQQGQQKNTGLELSANGWATQRLQIAASVA AIRSRVEGTGTPAYEGHQTLNVPRLRASLQGDYALPWLDGLALLGGMQYSGSQYADRQGNVATGAYAIFNIGSRYSTRIDGYDTVFRLTVDNLFDKRYWR DTGEYMGDDYLFQGAPLTARLSASVNF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site