Pseudomonas fluorescens AU13852, AA097_RS24815

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU13852 Contig_38, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGGTCGCGGCCCTGCGCAACAGGCTGCCCTGATGACGCGCTTGCCAGGTCAGGTGCCTCTCGGGCAGCGGGGCATGGCGTTGCTGGTCAGCCTGGTGTTC CTGTTGCTGCTGACCCTGATCGGGCTCTCGTCGCTGCAGAACGCCACCCTGCAGGAAAAGATGGCTGCCAGCCTGACTCTGCACAACCGCGCATTTCAGG CCGCCGAAGCCGCGCTGCGGGTGGGGGAGAGTGCGGTGCAGCAGGATGATTTCCGCTTGCCGGTATGTGCCAGCCCTGCTCAGTGCGCGCCTCCCGCCGA ATCAGCGCAGGTCAAGGCTCCTGGAGTCAATGCAGCTTCGGCGGTGCTGTGGATCGCTAGCGGCTCTGGCTTCTACGGGGTGCAGAACCTCGGTGTTTCA CAGGATGCGGTGAATGTGCCGAGCAATACTCCAGCCACCTTGTATCGCGTGACCGCTGTCGGTCTGGCCGGGCAATCGCGCAGTGTGCTGGAGAGCATCT
DNA Sequence for Gene
>AA097_RS24815
ATGCCAAGTATTGATCGGGGCATGCGTCGGCCTGGCTGGCGAAGCCTGGGCGCGCTGCTGCTGAGTCTGTTGCCGGTACCTCTAGCCATGGCGTTCAACC CTGCCAGCACCCCGCTTCTTGGTGCCGCGGCGGTGGCGCCGAACGTGATGTTGGTGCTGGATGACTCCCTGGGCATGAACAGCATTGTCCATGCCCGGGA GTTCGATCCGCTGCTCGCCCGTGCTGCGGTCTGGCGCTGTGCCGGAGTGGGGGGCGAGTGTGCTCGGGGTGAGCGACTTGCAGGCCAGGCGATTGCCTTG TCCAGCCTCGGCGAGTCGGGGTGCCGGGCAGGCTTTCACAGCTTCCATGATCCCGAACGTGGGGTGCGCTGCCTGAAGCTGCCGGACCCGGTTGGGGCTG GAAATACGCTGTACTCAGCGGACTACCTGTCCTGGCTACTGGCGCAGGCCAAGGGACGGGAGCGAGACTTCACTGACGGTTCCATTCCCAACGACTACCG GATGAATGTGGCGCGGCGGCTGGCCACGGCCCTGGTGACCCGGTATCGCTGGCTGCGCCTGGGGTTGGCCACCTTCAATCCGCCGGCCCCGGGTGATCCG GGCCCTGGGGGTTACATTGCCCGTCCCATCAGCGACCTGTCGGCCATTGAAGGCGCTGTGAGCCCGGCCCAGGCCGAGGCCAATTACCAGGCCCTGCTGG CGACAATCAATGGCCTCAAGGCCGGCGGTCATACGCCGTTGGCGGAAACCTACTACGAGATCACCCGCTACCTGCGCGGCATGGTGCCGTACTACAACCT TTCACCGGCGCTCTACAGCAGTCCCATTCAGTACCGTTGCCAGAAGAACTACGGGGTGGTGATCAGTGCCGGGGCAGCGGATCACGATACTCAGTTCCCG CTCAACGATCCGCTGGGGGCGGGGCGCCTGCCCAACTGGGACGGGATCGGCAACGACGGTAGCGAGCGTGATGGGCAGACCCTGTACCTCGATGACCTGG CCAAGTTCGCCTTCGATATCGACTTGCGTGGCCCAGGAGTGGATGAGGCCGGGAAAAGCTGGGCGGCGGTGGATTTCCCCCGTCAGTACCTGAATACCTT CACGGTGGGTTTCCAGGCATACAATCCTCTGCTGATGGGCGCTGCGGACTACGGTCAGGGTGAGTATTTCCAGGCCCGCAGCAACCTTGAGCGCGTGCTC GCAGGTGTTCTGGGCGAAGGCATAGCCAGTGTCGTGACTGCTGGCAGTGGTGTACTGGATGCCGCCAGTGGTCGTTATTACCAGAGCCAGTACGACCCGC TCGATTGGCATGGCACGATCCGCGCCTATGGCATCGACAATCAGGGCCGAGTGGCTGTCGATTCGCCGTTGTGGAGCAGCGATAGCGGCGTGGAGGGTGC CGGCGCGGAGGCAATCCATGAGACCTGGAACACTGCCAGCCGACGTCCGGTGAGCCTGGCCTATGGCAACTTGTCCACCGCTCAGCGTGGCGAACTTGAG CAGTCGTTGCCTGCAGGTGTCAGTGGCGCCGAGCTATTGGACTGGAGCCAGGGCCGCTCCGTGAGCGGGCTCAGGGAGCGCCGCTATCAGTTGGGAGATA TCGTCAATTCGCCGCTGGTGCTGGCCACTGCCGGGCAGCGCAGTGCTGTCGATGGGGCTGACGGGGGCGACTACAGCCGCTACCTGGCACAGAGAGCCAC GGCCATGGCGACGCGCTTGTTGGTGAACAGCAATGACGGGTTGTTCAATGTGCTGGACCCGGCCAGGGGTGAGCGCCTCTATGGCTACATGCCCTCCAGC GCGTTGGGCGCCCTGGCGCAGATCGCCGATCCCGGTTATCGGCGGGGCGAGCGCCATCGCTATCTGGTGGATGGCCCCCTGGCGGTGTTCGATGGGCAGC GGGGCGGTGCCTGGCAAACCCTGGCCCTGGGAGGCGTCGGGGCGGGCGGCAAGAGTTTCTTTGCGGTGCGTCTGTTCGACGCCGTGCACGGCAATACGCC TGGCGCCTTGTGGGAAATCGGCGCTCCTCCCGAGCCGGACCGCAATCATCCTTTCAATGACCTGGGGTATGCCTATGCCCGCCCACAGGTAGCGCGCTTG GCCGATGGTCGCTGGGCGGCTTTCATCGGCAATGGCTACGGCAGCCATTCCGGGGTGGCTGCCCTGTATGTGGTGGACCTGAATGATGGCTCGCTGATTC GCGAGATCGCCATTGACGACCAGCCTGACAATGGCCTGTCGTCCGTCACCCTCAAGGTCAATGCACGCAATGAGGTGCAGGCGGCCTATGCGGGCGACCT CAAGGGGCGACTGTGGAAATTCGAGCTGTCCGGCAACGATAGCGCCAGCTGGCATCTGGCATTTGCCGGGCAGCCCTTGTTCCGCACCGCCGGTGGCGCC AGCCAGCCGATCAGCGCACCGCCGCGCCTGCTCGATCATCCCCGTGGTGGCCAGTTGGTGCTGTTCGGCACGGGCAAGCTCAACGAGACCCGGGACAAGC AAAGCCGGGCACGCCAGGGATTCTATGGCGTGTGGGACGCAGAGGACGGTCCTGGGGGCATAAGCGAAAGTCAGTTGCAGGTGCAGCACCTTGAGGCCGG GTTCAGCGCGGCGGCCGGCAGTTTCCTGCGCAGCACCCTCAACGAGGTGCGTTATCCGGCGCAGCGCGGCTGGTACCTGCCCCTGGTACAAGGTGGCCTG GCAGCCGGCGAGCGGGTGCTCAACGAGGCGACCCTGGTGGCCGGCAGGGTGGTGTTCAGCACCCTGCAACTGGAGCCCGACGACCCTTGTTCGAGTGCCG GCAGTGGGAAATTGATCGAGCTGGAGGCGTTCAGCGGTAAGATGCTCGACGCTGCGGTGCTCGACACCAATGGCGACGGGGTCGTGGATGACCAGGACCA GCCCTCCAGCGGCGTGCGCTACGTCGGCACCGTGCCCAGCCTCGGCGGAGTTGCCAGCAATGGCGCCCGCAAGATCATCAGTGACTCCAGGGGGGGCATC AGCACCCTGGTGGAAAGGCCCGGTGGTGGCAGCCGGCGCATCCTGTGGCGACAAATCCAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGAGATTCTTGACCATGCGCAGATCCAACCAAGGTTTTACCCTGATCGAAATCATGATCGTGATTGCGATCATCGGTCTGGTCCTTACCTTGAGCCTTC CCAGCATCACCGAATACGTGAAAAAACCGCACCGCAGCGAAATCGCGGTACTGCTTACCGAGCAGGCGCAGCAGCTTGAACGGCATTTCTCCAAGGCCGG GGTCTACAGCAACGCCCCGGACCTGAGCGCCGGCAATGAGTACTACAGCATTGCCGCAACCCTGACCGACACCGGCTTCTCCCTGACCGCGACCCCGAAG GACGATGGGCTGATGGCGGCGGACAAGTGCGGCAGTTTCAGCATCGACCAGACCGGCGCGACCCGCATCAGCGGCCAGGCCGAAGGGCTGACCGCCAAGG ATTGCTGGGGGCGCTGAGCACCTGATTCGGGCCGCGGCGCCCACTGTCTTTCTCATGATTGGATCGGACTATGGCTAAGCAACAGCAAGTGCTGGTGGTG
Amino Acid Sequence
>pilus assembly protein
MPSIDRGMRRPGWRSLGALLLSLLPVPLAMAFNPASTPLLGAAAVAPNVMLVLDDSLGMNSIVHAREFDPLLARAAVWRCAGVGGECARGERLAGQAIAL SSLGESGCRAGFHSFHDPERGVRCLKLPDPVGAGNTLYSADYLSWLLAQAKGRERDFTDGSIPNDYRMNVARRLATALVTRYRWLRLGLATFNPPAPGDP GPGGYIARPISDLSAIEGAVSPAQAEANYQALLATINGLKAGGHTPLAETYYEITRYLRGMVPYYNLSPALYSSPIQYRCQKNYGVVISAGAADHDTQFP LNDPLGAGRLPNWDGIGNDGSERDGQTLYLDDLAKFAFDIDLRGPGVDEAGKSWAAVDFPRQYLNTFTVGFQAYNPLLMGAADYGQGEYFQARSNLERVL AGVLGEGIASVVTAGSGVLDAASGRYYQSQYDPLDWHGTIRAYGIDNQGRVAVDSPLWSSDSGVEGAGAEAIHETWNTASRRPVSLAYGNLSTAQRGELE QSLPAGVSGAELLDWSQGRSVSGLRERRYQLGDIVNSPLVLATAGQRSAVDGADGGDYSRYLAQRATAMATRLLVNSNDGLFNVLDPARGERLYGYMPSS ALGALAQIADPGYRRGERHRYLVDGPLAVFDGQRGGAWQTLALGGVGAGGKSFFAVRLFDAVHGNTPGALWEIGAPPEPDRNHPFNDLGYAYARPQVARL ADGRWAAFIGNGYGSHSGVAALYVVDLNDGSLIREIAIDDQPDNGLSSVTLKVNARNEVQAAYAGDLKGRLWKFELSGNDSASWHLAFAGQPLFRTAGGA SQPISAPPRLLDHPRGGQLVLFGTGKLNETRDKQSRARQGFYGVWDAEDGPGGISESQLQVQHLEAGFSAAAGSFLRSTLNEVRYPAQRGWYLPLVQGGL AAGERVLNEATLVAGRVVFSTLQLEPDDPCSSAGSGKLIELEAFSGKMLDAAVLDTNGDGVVDDQDQPSSGVRYVGTVPSLGGVASNGARKIISDSRGGI STLVERPGGGSRRILWRQIQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site