Pseudomonas fluorescens AU13852, AA097_RS28625

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU13852 Contig_36, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCGACCTGCCGCTGTTCATGAACGTGGGCAGCGGCAAGACCGACTTCACCCTGGCCGACAGCGCCCCGGTACAGGCCATCCGCTGCCTGGCGGGCCCGA GCCGGCCGCGCCCCAGCCATGCCCACGACGGCAAGGCCTGGCGCCTGATCAGCCAGCTGTCGCTGAACTACCTGTCCCTCGCCGAACAGGGCCAGGGCGC GGCGGCCCTGCGCGAGCTGCTGCGGCTGTACGGCGACAGCAACGACGCAGCCCTGCAGTTGCAGATCGAGGGCCTGCGGGAAGTCAGCAGCAAGGCGGTG ACCCGGCGCCTGCCGATGCCCGGGCCGATCGTCTTCGGCCGGGGCCTGGAGATCACCCTGGAGTTCGATGAAAACGCGTTTCGCGGCACCGGGGTGTTTC TGCTCGGCGCGGTATTCGAGCGCTTCCTGGCACGTTATGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCG
DNA Sequence for Gene
>AA097_RS28625
ATGGAAAGCCAAGCCCGGACGTCGTCCGACTCTTTGAATACGCTGACGGCGATGCGCGCCGAGCCCTGGGAGTACGACTTCTTCCAGGCCCTGCGGCGTA TCGAATGCCTGTCGCCGCAACTGCCGCGCTTCGGTCACTCCCTGCGCCTGGCGGACGATCCCTTGCGCCTGGGCCAGCAGGCCGACTGCACCTTCGCCCC GGCCACCCTGGCCTCCGTCACCCCCGGCAGCGACGGCGCCGCAACCCGTCTGGAGCAGTTCTTCTTTGGCCTTGGCGGGCCCAACGGGCCGCTGCCGCTG CACATCACCGAGTACGTGCGCGAGCGCCAGCGCAACAACGCCGACAGCACCAGCAAGCGCTTTCTCGATGTGTTCCACCACCGCCTGCTGAGCCTGTTCT ACCGGGCCTGGGCCGAAGCCCGGCCGACGGTGAGCCACGACCGCCCGGACGACGACTACTGGTCGGCGCGCCTCGCCGCCCTGAGTGGCCGGGGCATGCC CAGCCTGCTCAAGCAGGGGCTGATCCCCGACACCGCCAAGCTGCACTACAGCGGCCACCTGGCGGCCCAGACCCGCTACCCGGATGGCCTGCGGGCGATC ATCGGCGAGTACTTCGGCCTGCCGGTGCAGATCGAGGAATACGTCGGCCAGTGGCTGGAGCTGCCCGATCGCAGCCGGCTCGGGGTGCAGTCCCATCAGC TGGGGGTGGACTTCTGCCTGGGCAGCCACGTCTGGGACCGCCAGCACAAATTCCGCATTCGCCTGGGTCCGCTGAAGCTCGACGAGTACCTGGGGATGCT GCCCGACGGCCAGCAGTTCAAGGAACTGGTGGCCTGGGTCGCCGAATACCTGGGGCATGAACTGGACTGGGACCTGAACCTGGTCCTGCTCAAGGACGAA GTGCCCAAGCTGCAACTCAACGGCCGCCAGCGCCTGGGTTTCAACACCTGGCTCGGCCAACCCGGCAGCGATGCCAAGGATCTAATACTGGCCCGGCACT ACGCCGACCTGGCCACTACCTCACATACACCAAGGAGCACAGAGCATGGGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATCAGTCGCGCGGCGCTGTTCGGCAAACTCAACAGCGTTGCCTACAAAGCCATCGAAGCCGCCACGGTCTTCTGCAAACTGCGGGGCAACCCCTATGTG GAACTGGCCCACTGGTTTCACCAGTTGCTGCAACTTACGGACTCGGACCTGCACCGCATCATCCGCCAGTTCAACCTGGAGCCGGCGCGCCTGGCCAAGG ACCTGACCGAGGCCCTGGACCGCCTGCCCCGGGGCTCGACCTCGATCACCGACCTGTCGTCCCACGTCGAGGAGGCGGTGGAACGCGGTTGGGTCTACGG CAGCCTGATGTTCGGCGAAAGCCAGGTGCGCACCGGCTACCTGGTGATCGGCATCCTCAAGACCCCGAGCCTGCGCCATGCGTTGCTGGGGCTGTCCCGC GAGTTCGACAAGATCAAGGTCGAGACCCTGTGCGAGCGCTTTGACGAGTACATCGGCGACTCGCCGGAAAACGCCCTGAGCGCCAGCGACGGCTTCAGTG
Amino Acid Sequence
>type VI secretion protein
MESQARTSSDSLNTLTAMRAEPWEYDFFQALRRIECLSPQLPRFGHSLRLADDPLRLGQQADCTFAPATLASVTPGSDGAATRLEQFFFGLGGPNGPLPL HITEYVRERQRNNADSTSKRFLDVFHHRLLSLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRGMPSLLKQGLIPDTAKLHYSGHLAAQTRYPDGLRAI IGEYFGLPVQIEEYVGQWLELPDRSRLGVQSHQLGVDFCLGSHVWDRQHKFRIRLGPLKLDEYLGMLPDGQQFKELVAWVAEYLGHELDWDLNLVLLKDE VPKLQLNGRQRLGFNTWLGQPGSDAKDLILARHYADLATTSHTPRSTEHG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site