Pseudomonas fluorescens AU13852, AA097_RS20990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU13852 Contig_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TAAAACCGCTGCTTTGACGCTTTTCTAGTGACAGTGTTTCGGCTAATGTGGCGCCCCCGATTTGGAGCCCCCGATGCCGCGTCCCGCCTGGTCCCTGTTT GCCTATCAACTGATCGAGCCTGATGAGCAGCTTGACCTGTTCGCCTGCCAGGAAGTTCGGGTGCATCTGGTGACGCGTCAACTGGAGTTGGGCGGCTCTG CCGACCGCACGTTGTGTGGCACTTTGTTGCCCGCGCAACCGCGCTGGTCGAGCGTGGATCGGACGATTTTCCAGGACCAGCGACTCTGCCCGTTGTGCCG GGCGATTCTGGAGTCGCAAAAACGTGGCACTCCGCCGATCTGGCCTGAGCTGCGTTTCGAGCTGTAGGCGGTCGCCAGCAGGCCGTTTCGACAGGGAATT CATGTGTCTGCGCTTGTCTCCCGGCCTGGCTCCCGTAGCCGGAGGGCGGGGTGTACAATCGTGTTTCTTTCATTCGTTGTTCATGCGAAGGATTATCCGG
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| DNA Sequence for Gene |
>AA097_RS20990
ATGTTGCCCCGCCTCCCTGTCGTCACCCGCTGCCTGACACTTGCCGCCCTGTGTGTGGCCGGTCCTGTTGCCGCATTGGAATTGCCTCTACCGCCGCCGG GTGAAGACATCGTCGGCCAGGTACAGGTGATCAAGGCCAAGTACGAGGATACCTTCGCCGACCTGGGCACGGCCTACGACCTGGGTTACCTGGAAATGGT CGCGGCCAACCCGGGCGTCGATCCCTGGCTGCCGGGGGCGGGCACCGAAGTGATCCTGCCCACGCGTTTCATTCTGCCGCCCGGGCCCCGCGAAGGCATC GTGATCAACCTGGCTGAGTATCGACTGTACTACTACCCCAAGGGGCGGAACGTGGTCTACACCTTCCCGCTGGGGATTGGTCGTGAGGGCTGGGGTTCAC CAATTGCCCACACCAGCATCACCGCGAAAACCCCGAATCCGACCTGGACGCCCCCGGCCTCGATCAAGGCCGAGCACGCCGCCGACGGTGACCCCTTGCC GAACGTGGTACCGGCCGGGCCGGACAACCCCTTGGGGCCATTCAAGTTCACCCTTGGCACACCGGGTTACCTGATCCACGGTTCGAACAAGAAGTTCGGT ATCGGCATGCGCACCAGCCACGGCTGTTTCCGCATGCTCAACAACAACGTGCTGGAAATGGCCGGCATGGTGCCGGTGGGAACTTCGGTGCGCATCATCA ACGATCCGTACAAGTTCGGCATCAGTGGCGGGAAAGTCTACCTGGAAGCTCATACGCCGTTGGATGACAAAGGCAATCCTTCAGTGGTCGACAAGCACAC TGCGGTGATCAATGCCTTGCTCAAGCGTGAGGACCTGGCCAACAACCTGCGCATGAACTGGGATGTGGTGCGTGATGTAGTGGCAGCCGAAGATGGCTTG CCGGTGGAGATCGCCGTGCCGACGACAGCGCCTGTGACAACAATGTCCAACGCGACCTACGATTTGCAGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCTTGAGTGCAACCCGCCGATACCTGTTGGTAGCGGCGGGTTTTTTATTGCCGGTGAAGAACTCCGGGCAATAAAAAAGCCGATCCAAAAATGGATCG GCTCGATAACAATCCCGAGGGACTATTACTTGCGGCTAGCTTTTTCCAGCATACGCAGAGCGCGCTCGTTAGCTTCGTCAGCAGTCTGTTGTGCTTTTTG AGCAGCAGCCAGAGCTTCATCAGCTTTACGATAGGCTTCGTCTGCACGAGCCTGAGCGCGAGCTGCTGCGTCTTCAGTAGCAGTCAGACGAGCTTCGGTT TCTTTGGATACGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAGAGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGTGTTCCCCTTCAAGGACTTTC TATTAGTAGCTATCACCTCAGAGTGAGGAAATAGCCGGCGTACATACTACCCATTACTTGTAGTAAGTAAACTGACGTAGCGCAAGAAGCAAAAAAAATT
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| Amino Acid Sequence |
>transpeptidase
MLPRLPVVTRCLTLAALCVAGPVAALELPLPPPGEDIVGQVQVIKAKYEDTFADLGTAYDLGYLEMVAANPGVDPWLPGAGTEVILPTRFILPPGPREGI VINLAEYRLYYYPKGRNVVYTFPLGIGREGWGSPIAHTSITAKTPNPTWTPPASIKAEHAADGDPLPNVVPAGPDNPLGPFKFTLGTPGYLIHGSNKKFG IGMRTSHGCFRMLNNNVLEMAGMVPVGTSVRIINDPYKFGISGGKVYLEAHTPLDDKGNPSVVDKHTAVINALLKREDLANNLRMNWDVVRDVVAAEDGL PVEIAVPTTAPVTTMSNATYDLQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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