Strain | Pseudomonas fluorescens strain AU13852 Contig_14, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACATGTTCCTCGGCATCGCCGAAGGCGCCTTCGAAGAAGCCCGGCAGTACACCCTCGGTGAAACCCGGGTCTGGCATAAGTCCAGCGCCCAGGACGTGCG CCAGGACCCCTACATACTCAGCCACTACGGCGAATTCTGGGTCGCCCTGGAAGGCATCCGCCTGCTGGTGGAGCGGGCCGCCGCGCTGCTGGACCAGGCC TGGGCCAAGGGCCCGGCCCTCAGCGCCGAAGAGCGCGGGCACCTGGCCACGGCCATCGCCACCGCCAAGGTCGCCGCCAGCCGCCAGGGCCTGGAGCTGT GCAGCCGCCTGTTCGAAGTCACCGGCGCGCGCTCGACCCACGCCTCCCTGGGCCTGGACCGGCACTGGCGCAACCTGCGCACCCAGACCCTGCACGACCC GCTGGACTACAAGCTTCATGAGCTGGGCGACTGGGCGCTGAACCAGTCCCTGCCAACCCCGACTTTCTACTCCTAGCCTTCTGTTCGACGGAGAGTGCTG
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DNA Sequence for Gene |
>AA097_RS20405
ATGCAGCTTCTGACCCTACCCCCTTCGCCCGCCCTGGCGACCTCGATCCGCGCCACCGCCCAGGTGTTCGAGGACCCGAAATCCCAGGCCCTGCTGGCGC ACCTGCAACAGGTGGCACCGAGCGAAGCCAGCGTGCTGATCATTGGCGAAACCGGGACCGGCAAGGAACTGGTGGCGCGCCATATCCACAACCTCAGTGC CCGGCGCAACCGACCGTTTGTGGCGGTGAACTGCGGTGCCTTCTCCGAATCCCTGGTGGAGGCGGAACTGTTCGGCCACGAGAAAGGCGCCTTTACCGGC GCCCTCAGCGCCAAGGCCGGCTGGTTCGAAGAGGCCGACGGCGGCACCCTGTTCCTCGACGAGATCGGCGACCTGCCCATGGCCATCCAGGTCAAGCTGC TGCGGGTGCTGCAGGAGCGCGAAGTGGTGCGCCTGGGTTCGCGCAAGAGCATTCCCATCGATGTGCGCGTACTGGCCGCCACCAACGTGCAACTGGAAAA GGCCATCAACGCCGGGCATTTTCGCGAAGACCTGTATTACCGCCTGGACGTGGTCAGCCTGGAACTGAGCCCGCTGCGCGAGCGCCCCGGCGACATCCTG CCGCTGACCCGGCACTTCATCGAGGCCTACAGCCAGCGCCTGGGCTACGGCAGCATCAGCATCAGCCCCGAGGCCGAGCACAGGCTCAAGAGCTACAGTT GGCCGGGCAACATCCGCGAGTTGGAAAACGTCATCCACCACACCCTGCTGATCTGCCGCAACGGGGTGATCCAGCGCGACGACCTGCGCCTGTCGAACAT GCGCATCGAACGCGCCGACGACAGCCACCCGAGCCACGACGACTCCGCCGAGGCCCTGCTGGAACGGGCCTTTGAAAAACTCTTCGCCGAACAGGCCGGG GCCCTGCACGAAAAGGTCGAGGATGCCTTGCTGCGCGCGGCCTACCGCTTCAGCCACTACAACCAGGTGCACACCGCCAACCTGCTGGGCCTGAGCCGCA ACGTCACCCGGACCCGGCTGATCAAGATCGGCGAACTGGCGGTGAACAAGCGGCGCCCGCTCGATGCGCCCAACGAGCGCACCCTGCAACTGTCGATCTA G
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCCGGCAGGTCGCAGTGCAAGGCATTGTCGTGGCTGCGGGCGATGCTGCTGCGCACCTGGAATGAACCGAAGGTCACGGTCTTGGCCTGGTGGGCCAGGA TCAACTGCCAGAAATCCTGCTCGCCGTTCTCGAAGCGCCGGAACGCCGCTTCGCCGGCTTCCCGGGATTGCCATTGCAGGTAATTGAGCACCCGCCGGCC ATCGTCGCTGGCCTGCACGCTGGCACTCAGGAAACCGCCATAGCCCTGGGCCAGGCGCTCAGTCTGCTCGGCCAGGGCCGATACCAGGGCCTGTTGCTGA TGGGGCTCGATTTCGAACTCGATCAATTGGGTAAAGCTGCGGGCCTTTTCAAAAGCGCTCATGGATCACTCTCCACTGGGGGCAAACAGAATATTGCTGT TGAATGCGCCGCAGGGTAAAACCTCTAGTTAAGTCAAGGTCAAGCGTATTTTTCCTCCCGAGGTGCATTGATGATCGAACCCGACTCCCATCAAAAAGAG
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Amino Acid Sequence |
>Fis family transcriptional regulator
MQLLTLPPSPALATSIRATAQVFEDPKSQALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTG ALSAKAGWFEEADGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPIDVRVLAATNVQLEKAINAGHFREDLYYRLDVVSLELSPLRERPGDIL PLTRHFIEAYSQRLGYGSISISPEAEHRLKSYSWPGNIRELENVIHHTLLICRNGVIQRDDLRLSNMRIERADDSHPSHDDSAEALLERAFEKLFAEQAG ALHEKVEDALLRAAYRFSHYNQVHTANLLGLSRNVTRTRLIKIGELAVNKRRPLDAPNERTLQLSI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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