Pseudomonas fluorescens AU13852, AA097_RS07200

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU13852 Contig_11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCC
DNA Sequence for Gene
>AA097_RS07200
ATCAAGAGCAAGGACAGGCTCAACCTGGCGGTCGGCGTCACCCTGACCTCCGAGCAGGTCGCGGCCTTGACCCACGATATCGTCTGGCTGGAAAAAGCAG AGGTCAACGGGGAGCAAGTTTTGGTGCCCGTGCTGTATTTGGCCCAAACCAATAACCGCTTGGCGCCCAATGGCGCGCTGATTGCCGGTAATGACCTCAA CCTGATCGCTGGGAAGAACCTGGATAATGCCGGCACACTGCGAGCGACCGGGAACCTGTCTGTCCAGACAGGACATCATCTAGTCAATAGCGGCCTTGTT GAGGCCGGCAATCGCCTGGATCTGCTTGCAGGTAATACTCTGGTGAACAAGGCGGGAGGCATCATCGCCGGGCGTGACGTTAACGTTATTGCTACCCAGG GGGATGTTCTTAACGAGCGGACGTCCACTCGCTTGGAAAGTCAATTTGGAAGGTCCCACTATCAAAATGATGTGATGGATAGCGCTGCTCGTATTGAGGC GGCGAATGCCCTGACCCTGCAAGCCGGACGTGACATTAGCAATATCGGTGGAGGTCTGAAAAGTGGTAGCGACCTGACACTCCGGGCGGGTCGTGACATA AATATTGCGTCCGCAGAGCAACTCGACAATCTAGAGCAAAGTTCGCGTAGGCAAAATAAAACCGTCACCCAGTTTGGCTCTGCGGTAGAAGCTGGCCGTG ATTTGAAGGCTGAAGCAGGACGCGATATCACCGCTATCGCCAGCGAGATTGAAGCCGCGCGCGACATCACCATGTCTGCCACGGAGAACCTTACCCTGGC CTCCGCAGCGGATGAGCAGCATTCCTACAGCAAGAGTAAGAAAGTCACCCGTCAGGAAGACCATATCAAGCAGGTAGAGACCAGCGTCAAAGCGGGTGGC GATGTGACGTTGGGCGCTGGCAACAACCTGATGCTGATCTCCAGTCGAGTCGAGGCAGGTGATGAGGCGTATCTGGTGGCTGGCGACAAGCTGGAATTGC TAGCAGCGCAGGACAGCGATTACTCGCTGTACGACATGAAGAAAAAGGGTAGCTGGGGCAAGAAGAAAACCCAGCGTGATGAAGTCACCCAAGTCTCTAA CGTTGGCAGTGGGATCAAGACCGGGGGAGACCTGACGCTCAAGAGTTACGGTGACCAGAGGTATCAGGTCGCCAAGTTGCAAAGCAGCAAGGACATCACC CTGGATAGCGGTGGTGCCATCACCTTTGAAGGGGTGAAGGACCTGCACCAGGAGAGCCACGAGAAGAGCAGTAACAGCCTCGCCTGGACCAGTGCCAAGG GTAAGGGCAACACCGATGAGACTTTGCGTCAGAGTCAGTTGGTGGCTAAGGGCGAATTGATCATCAAAGCCACCGATGGTTTGAAGATCGACCTCAAGCA GATCGACCAAAAGTCCATCAGTCAGACCATCGACGCCATGGTGCAAGCCGATCCGCAACTGGCCTGGCTCAAGGAGGCCGAGAAGCGCGGCGATGTGGAC TGGCGCAGGGTGAAAGAGGTCCATGACAGTTACAAATACAGCCATTCCGGGCTTGGCCAAGGGGCGATGCTGGCCATCATTATCATCGTGACTGTTTTGA CCGCAGGCGCGGCGAGTGGCGCGGTGGGTACGGCATTTGCGGGTGCCGGTTCTGCAGGTAGTGGCACCGTTATGGCGGCTGGCGGGGTTTCCACCGTTGG GGCTTCTGCAGGCACCTTTGTTGCTGCCGGTTGGGGCAACGCCATGGTTACGGCCGGCCTGACTTCAATGGCCAGCACCGGGGCTGTCAGTGTCATCAAC AACAAGGGCAATCTTGGCGCAGCGTTCAAGGAAACTTTCAGCAGTGACAGCTTGAAAGGCGCTGCAATATCGAGCCTGACCGCTGGATTCACCACGGGAG TTATAGATCCTCAGCTAGGGGGACAAACCAAACCCTTTAATGGCCTCACCAAAGGATTTGATCTCAGAACACTGGAGGGTATTGGTGGTTTCGCAGCACA TGCGGGAGCTCAGGGGGTGGCAGCAGGGGCGATTAAAACCGCCATTGATGGAGGTAGTTTTACTCAGAACCTGAATGCAAGCCTGGTTTCTCAAGCTGGA AACGTAGTCGCCGCTACTGCGTTTAACTTCGTTGGGGGGTATGCGCAAGAGCATTGGCAAGCTGCAAAGAATGCTGGTGATACAACGGGGATGGCTATGT GGGCTGAGGGGGGCGCAGCCAGAGTCGCGATGCATGCCTTGTTTGGTGGCGCGGTGTCTAGTGCTACAGGAGGTGACTTCAAGACAGGAGCTATCGCCGC TGGCGCCAGTCAGGCCATGGCGCAAGTGTTGAATGACATCTTTGATCAGCAGCCTGCTTTGAGGCAGGGATTCTCACAAATTGTTGGATTGGCGGTAGCG GGTGCTGCTGGAGGTGATGTCAACAAGGCTTCATGGGTTGCGCAGATGGCCGATGAATACAATCGCCAACTGCACCAGAAAGAAACCCTTGCCCTTGAGG AA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CTACAGCGCGAAGACCCAGAGAATGCCTACCAGCTTCGGGCAGCTGCCTGTGCCTTGGTAAACTGCTTGTCTTCGGTTCCTCCTGATGATCCCTTGTATA ACGCCGTTGTACAGCTTGAGGCGGATGGGCGTAACTTCAAGGATGCGCAAGCCAAGCTCATGGGCACCGGAGCTTTTGATGAGTATGGAGCATGGGACAA GGCGAATGATGAACTTCTAAGAAACCACAAAGAGCTTAGTCGCTCAGGTAATGCTAGCCGAGCAGTCTTGGGAGCGGTTGGTGCAGCTGCCGGATTCGGC GGTGCGATATTGACTACTCCGGCCTGCGTCACGGGTTTAGGTTGCGCACTGCCTACTTTCTCTGCATTGGGGGGTACGCTCTCGTTCCATGATGGATGGC AGGCGACGGGCCAGTTGTTTGCTCCGTACGAATACACTCAAGGCAGTAAAGTCCTCAATTCGTTTAGCTCAGAGAGCTATCCTGGCGATGTCAGCCCGAT
Amino Acid Sequence
>filamentous hemagglutinin
MKSKDRLNLAVGVTLTSEQVAALTHDIVWLEKAEVNGEQVLVPVLYLAQTNNRLAPNGALIAGNDLNLIAGKNLDNAGTLRATGNLSVQTGHHLVNSGLV EAGNRLDLLAGNTLVNKAGGIIAGRDVNVIATQGDVLNERTSTRLESQFGRSHYQNDVMDSAARIEAANALTLQAGRDISNIGGGLKSGSDLTLRAGRDI NIASAEQLDNLEQSSRRQNKTVTQFGSAVEAGRDLKAEAGRDITAIASEIEAARDITMSATENLTLASAADEQHSYSKSKKVTRQEDHIKQVETSVKAGG DVTLGAGNNLMLISSRVEAGDEAYLVAGDKLELLAAQDSDYSLYDMKKKGSWGKKKTQRDEVTQVSNVGSGIKTGGDLTLKSYGDQRYQVAKLQSSKDIT LDSGGAITFEGVKDLHQESHEKSSNSLAWTSAKGKGNTDETLRQSQLVAKGELIIKATDGLKIDLKQIDQKSISQTIDAMVQADPQLAWLKEAEKRGDVD WRRVKEVHDSYKYSHSGLGQGAMLAIIIIVTVLTAGAASGAVGTAFAGAGSAGSGTVMAAGGVSTVGASAGTFVAAGWGNAMVTAGLTSMASTGAVSVIN NKGNLGAAFKETFSSDSLKGAAISSLTAGFTTGVIDPQLGGQTKPFNGLTKGFDLRTLEGIGGFAAHAGAQGVAAGAIKTAIDGGSFTQNLNASLVSQAG NVVAATAFNFVGGYAQEHWQAAKNAGDTTGMAMWAEGGAARVAMHALFGGAVSSATGGDFKTGAIAAGASQAMAQVLNDIFDQQPALRQGFSQIVGLAVA GAAGGDVNKASWVAQMADEYNRQLHQKETLALEE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site