Pseudomonas fluorescens AU11136, AA055_RS04615 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11136 Contig_56, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAGTGACCAGAGGATCAGCGCCAAAATGCCGAATACGCCGTCGTGGTTGACTTGAACCCCGTAAGCACCGGAAAACACCTCTTTGAGGGTATATAACG GGCTGGTCCCGATGTCGCCGTAGACCACCCCGACTGCTGCAACCAGCATCCCAATCGGCCTGGCTGTGGAATGCCCGCTTTCTGCCGCCTGACTACTTGC CTGCCCCATCAACCACTCCTACAACTCTGGTCTACGTTTCTTAATGGCGAGCGCTACGCTTGATCGGCAGCATGCGCTGATTGTCTGACTGTTATCTACG AAAAATCGCAGGTTAAAAACCCTACTTTCGCAACGGCGCGCAGCATAGCGCAGCACTCGTCGTAAATCCCCGTATAACGCTGGTCAAGTGCGTTGACCAT AGCTAAAATTGCGCACTTTTTTTCACTAGAGGCGCATCAAGCGTCCGTTCGTCGTGCAGCCTTTACGGGCATGTAACGTCACTACATACCGAGGTTCGCC
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| DNA Sequence for Gene |
>AA055_RS04615
|rimO
ATGTCCACCGTTACCACGCCAGCCAACCCCAAGGTTGGCTTCGTCTCTCTGGGTTGCCCGAAAGCGCTGGTCGACTCCGAGCGCATCCTGACGCAGCTGC GTATGGAAGGCTACGATGTCGTTTCCACCTACCAGGACGCCGACGTCGTGGTGGTCAACACCTGTGGCTTCATCGACAGCGCCAAGGCTGAGTCGCTGGA AGTCATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTGACCGGCTGCATGGGCGTCGAAGAAGGCAACATCCGCAACGTGCACCCAAGCGTGCTG GCGGTGACTGGCCCTCAGCAATACGAGCAAGTGGTCAATGCCGTGCACCAAGTCGTGCCGCCACGTCAGGATCACAACCCGCTGATCGATCTGGTGCCGC CCCAAGGCATCAAGCTGACCCCGCGTCATTATGCGTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATTCCCTCGATGCGCGG CAAACTGGTCAGCCGTCCGGTAGGCGATGTGCTGGACGAAGCTCAACGCCTGGTCAAGTCCGGGGTTAAAGAGTTGCTGGTCATCTCCCAGGACACCAGC GCATACGGCGTGGACGTGAAATACCGCACCGGCTTCTGGAATGGCGCCCCCGTCAAAACCCGCATGACCGAGCTGTGTGAAGCGTTGAGCACGCTGGGTG TCTGGGTGCGCTTGCACTACGTTTACCCGTACCCGCACGTGGACGAGCTGATTCCTTTAATGGCAGCGGGCAAAATCCTGCCGTATCTGGACATTCCGTT CCAGCACGCCAGCCCTAAAGTGCTCAAGTCCATGAAGCGCCCGGCGTTCGAAGACAAGACCCTGGCCCGCATCAAGAACTGGCGCGAAATCTGCCCGGAC CTGATCATCCGCTCAACCTTCATTGTCGGCTTCCCCGGCGAAACCGAAGAAGACTTCCAGTACCTGCTGAACTGGCTGACTGAAGCGCAACTGGACCGCG TAGGCTGCTTCCAGTACTCGCCGGTAGAAGGCGCACCGGCCAATGATCTTGACCTGGACGTCGTGCCAGACGAGATCAAGCAAGATCGTTGGGAACGCTT CATGGCGCATCAGCAAGCCATCAGCGCCGCACGCTTGCAGATGAAAATCGGCAAGGAGATCGAAGTCCTGATCGACGAAGTGGACGAGCAAGGCGCAGTG GGCCGCTGCTTCTTCGACGCACCGGAAATCGACGGCAATGTGTTTATTGCCACCGAAAAAGACATCAAGCCGGGTGACAAGATCATGTGCCGTGTCACCG ATGCGGACGAATATGACTTGTGGGCTGAAGCGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACGCCATCAGCTCTCAAAAAGCCCTGCCGCGCTCGCGTCAGGGCTTTTTTTACGACTATTGTTAAGCCATGCCCTTAATCACGGATGAGGAGACCTGCT CAGAATGAAGCCGACTTGGGTCGTTCAAACACCGAGCCTCAAAGATTTCAATGAACTCGCCAATGTGTGGGAAGCATCGGTTCGCGCCACCCACGATTTT TTGCCCCGCAGCTACATTCAGGAGCTTAGAGAGCTGGTGGAGCATCGCTACCTGGATGCCGTGATGCTGGTGTGCTGCCGCGACCCTGTGAACAAGCGCA TTGCGGGGTTTGCCGGGGTGGCGGCGCGCAAGGTCGAAATGCTGTTTATTCACCCCGATTACCGGGGACACGGGGTGGGCAAGAGCTTGCTGATATTTGC CATCAACGAGCTAAACGCGACTGAACTCGATGTGAATGAGCAGAACCCGCAGGCCATCGGCTTTTACCTCAAACAAGGCTTTGAAGTGATCGGCCGCAGC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTVTTPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVL AVTGPQQYEQVVNAVHQVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKNWREICPD LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEGAPANDLDLDVVPDEIKQDRWERFMAHQQAISAARLQMKIGKEIEVLIDEVDEQGAV GRCFFDAPEIDGNVFIATEKDIKPGDKIMCRVTDADEYDLWAEAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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