Pseudomonas fluorescens AU11136, AA055_RS04380
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11136 Contig_56, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGTAGCTGTTGTTGAGTTCCAACTCGATTTGCACCTGCGGGTAATCGTGGGAGAACTCCAGCAATAGGGAGTCAAAGAATGTTTCCCCTAATGAGACA GGAACAGTCATGCGCACAGGTCCGGCAATATCTTCCTTGAGACGTGCCAACGCCTGACGTGCGAGTTCGACTTGAACCCCAAGCGCTTGGGCCTGCGGCA ACAGCGCCGCACCCGCTGCCGTTAGGCTCAAGCGACGCGTGGTTCGGTGCAGAAGCACCACCGAAAACTGCGTCTCCAGCTGGCTGATACGCTTGGATAA CTGGCCTTTGCTGCACCCCAATTGTTGAGCAGCCCGCGTGAAACTGCCCGCATCGACCAATACTGCAAATGCCGCCAGATCATCCATCTCACTCATCGAT TGTTTCCACATGAAAACCAAAGGTTGCTAATTAGTGTGCTTATCACATCAAAAAACCAGCCCTAGACTAAGCCCACATTCACTTCATACAGGTACAGGCC
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| DNA Sequence for Gene |
>AA055_RS04380
ATGAAAATCCTATTGATCGGTGCTCACGGCACCATTGGCTCAGCCATTGATCGCGAACTTTCACCCCGTCACGAAATTGTGCGCATCGGCCGCAAAAGTG GTGATTTTCAGGTGGATATCAGTGATAGCGCGTCCATACGCAAGCTGTTTCAACAGACCGGTCAATTCGACGCCTTGATTTGCGCTGCCGGTAGCGTGAC CTTTGCGCCCTTGGGACAAATGAGTGAAAAAGACTTCGTGCTGGGCTTACAAAATAAACTTATGGGCCAGGTCAATTTGCTGTTGATCGGCCGCGAATTC GCCAATGATGGCGCGTCGTTTACCTTCACCAGCGGCGTCATTAACCGTGAGCCTATTCGTACCGGTAGCTCGGCAGCACTGGTAAACGCTGCACTTGACG GTTTCGTAAAAGCTGCCGCCATCGAACTGCCGCGTGGCCTGCGTGTGAACTCGGTCAGCCCCACCGTACTGGAAGAAGCCATGGATCATTACGCTCCTTT CTTCCGCGGGTTCAAACCGGTTCCGGCCGCGGAGGTGGCACTGGCCTACGCAAAAAGTGTTGAAGGTTTGCACACCGGCCAGACGTATCAGGTCGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACTTGTGATGGCAGGCGAGCCTGAGTAACGTGGCGGCACTTGTCAGGAGACCCGAAGATGCGTGCTGCCCGTTCCTTAGTTTTAGTCGCCCTGCTCCC CGTATTCGCGGGCTGCCAATTGTTCAACAGCAAACCCGTGGACAGCCATGCGGGTTTGTCGCGTCTGCAAGGCCAGTTGGTTTCGACCGACGGTGAGCTG GTCTTCCAACCCTGTGTCGGACAACAGCGTTACGTGGTGCGTGACAGCGAAAACACCACGCTCGTACAAGATGCCGCAGACATGCCCATCAAGCCCGAGG CCCTGTTCGCGGACATTCGCGGCCAATTTATCGCCAGCAAAACCGCCGGTTCGAATGGCGAGGTCAACGTCAAACAGCTCTATCGTCTTGAACGCAGCAG TACGGCCTGCCAAGACCCGAACTTCAAGCAACTGACCGTGCATGCCAACGGCAACGGCCCGGCGTGGGAAGTCCGTGCGGGCAGTAAGGGCCTGGAGTTG
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| Amino Acid Sequence |
>short-chain dehydrogenase
MKILLIGAHGTIGSAIDRELSPRHEIVRIGRKSGDFQVDISDSASIRKLFQQTGQFDALICAAGSVTFAPLGQMSEKDFVLGLQNKLMGQVNLLLIGREF ANDGASFTFTSGVINREPIRTGSSAALVNAALDGFVKAAAIELPRGLRVNSVSPTVLEEAMDHYAPFFRGFKPVPAAEVALAYAKSVEGLHTGQTYQVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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